Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca12g00435 | ATGGCAGGAAATCCCTCAACACCGGATCCCTCATCGCCTACGTCTCCCCCTGCTGGTTTCAACACGGACCAGCTTCCTCACACCCACACTAGCCGTGCCTCTGAAGACGATGAAGCCTCCGTTGATCCTGACATCATTCGAGACGAAGAACAACCCGACGAAGATGAAGAAGAAGGAGAGGATCTTTTCAATGAGCGCTTCATGGATGATTATAGAGGGATGGAGGAAGCTGACCAGTACGAATCAATTGGGCTGGATGACTCGTTGGAGGATGACAGGGATTTTGATCAGATCATGGAAGATCGAAGGGCTGCAGAGGTGGAGCTCGACAACCGTGATGGTCGCGTTTCCAATCGCAACAAACTTCCTCAGCTTCTGCACGACCAGGATACAGATGATGACAGTTATAGGCCTTCTAAAAGGTCTCGAGCTGATTTCAGGCCTCCAGTTCCAAGCGATGATGATCTTGATGGGATGCAAAGTTCACCTGGAAGGTCACAGCGAGGACACTCAAGAGAAGATGTTCCAATGACTGATCAAACTGAGGATGATCGATATGAGGTAAATGGAATGCAGGATGAATATGATGATGGTGGGTACGAGATGTACCATGTTCAAGGTACACTCAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCCGGAAATTCAAGGATTTCTTGCTCACATATGTCAATCCGAAAAATGAACATGGTCAATTTGAATATGTGCGCCTGATAAATGAGATGGTGTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAATTTATCTATGTCCATCCCAACATTGCCATATGGCTGGCTGATGCACCTCAGTCTGTTTTAGAAGTAATGGAAGATGTTGCCAAAAGCGTTGTCTTTCAGCTCCATCCAAATTACAAAAATATACATCAAAAGATTTATGTTCGCATAACTAACTTACCAGTATATGATCAGATTCGAAATATTAGGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACCAGGCGCTCTGGAGTTTTCCCCCAATTGCAACAGGTGAAGTATGACTGCAACAAATGTGGGGCTGTTTTGGGACCTTTTTTTCAGAATTCCTATTCAGAGGTTAAAGTTGGATCCTGTCCCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAGCAGACAATTTATAGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGAATAGTTCCTGCTGGTCGACTTCCAAGATACAAGGAAGTGATACTACTGAATGATCTGATTGACTGTGCTCGACCCGGGGAAGAGATTGTACTGTCTTCTGCTTGGACTTGTTATTTTTTGGTCTCAGGTGTTACAGAATGCTTTTCTTATGTTGTTTATATTCTGTTAATGTTTCAGGAGGTCACAGGTATTTATACTAATAACTTTGACTTATCCTTAAACACAAAGAATGGATTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATCATGTTACAAAGAAGCAAGATCTGTTCTCTTCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATCGGAGAAAGGATTATTAAGTCTATTGCTCCATCAATCTATGGTCATGAGGACATAAAAACTGCAATAGCTTTAGCTATGTTCGGAGGTCAAGAAAAAAATGTTGAAGGAAAGCATCGACTGCGAGGAGACATAAATGTTCTTCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTCAAGTATGTTGAAAAAACTGGGCAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCTGCTGTGGGTCTCACAGCTGCAGTTCACAAGGACCCAGTCACTAGGGAGTGGACCCTTGAGGGTGGAGCCCTTGTTCTAGCTGACAAAGGAATTTGTCTCATTGATGAGTTTGACAAGATGAATGATCAGGATAGGGTAAGTATCCATGAAGCCATGGAGCAGCAGAGCATAAGCATATCAAAAGCGGGAATTGTCACATCTCTTCAGGCACGCTGTTCTGTCATTGCTGCTGCAAATCCTATCGGAGGAAGATATGATTCCTCAAAAACTTTTTCCTCAAATGTTGAATTGACAGACCCTATTATATCTCGTTTTGACATCCTCTGCGTTGTGAAGGATGTGGTGGATCCGGTTACTGATGAAATGCTTGCAAAGTTTGTAGTTGACAGTCACTTCAAGTCACAACCCAAGTGGGCTATTAAAGATGATAAGTCCTTGAGTGAGTCCCAAGATGTTTATGCATCTGCCATGCCAGCTGATCCTGAGATACTTCCTCAAGACCTACTGAAGAAGTACATTACATATGCAAAGTTGAATATTTTTCCAAGGTTGCATGATGCTGATTTGGATAAACTGACACATGTATATGCTGAACTGCGGAGGGAATCTTCACACGGGCAAGGAGTCCCCATTGCCGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCTAGAATGCATCTCAGACAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGGGTTCTACTTGATTCATTCATTTCAACTCAAAAGTTTGGGGTGCAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTATAATGAATTGCTCCTTTATCTTCTCCGTGAGCTTGTAAAGAATGCTTTGCATTTTGAAGAAATTGTCACCGGATCTGCTTCAGGTCTTACGCATGTAGATGTCAAAATAGATGATCTCTACAGCAAGGCTCAAGAGCATGAAATATATGATTTGAAACCCTTTTTCAGTAGCAGCCACTTTTCTAGGGCCAATTTTGTATTGGATGAAGAACGAGGAGTGATCAGACATCACCTTGCTAGATGA | 2910 | 0.4275 | MAGNPSTPDPSSPTSPPAGFNTDQLPHTHTSRASEDDEASVDPDIIRDEEQPDEDEEEGEDLFNERFMDDYRGMEEADQYESIGLDDSLEDDRDFDQIMEDRRAAEVELDNRDGRVSNRNKLPQLLHDQDTDDDSYRPSKRSRADFRPPVPSDDDLDGMQSSPGRSQRGHSREDVPMTDQTEDDRYEVNGMQDEYDDGGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGQFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVAKSVVFQLHPNYKNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAVLGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIVLSSAWTCYFLVSGVTECFSYVVYILLMFQEVTGIYTNNFDLSLNTKNGFPVFATVVEANHVTKKQDLFSSYKLTQEDKEEIENLGKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSSNVELTDPIISRFDILCVVKDVVDPVTDEMLAKFVVDSHFKSQPKWAIKDDKSLSESQDVYASAMPADPEILPQDLLKKYITYAKLNIFPRLHDADLDKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSASGLTHVDVKIDDLYSKAQEHEIYDLKPFFSSSHFSRANFVLDEERGVIRHHLAR. | 970 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca12g00435 | 969 | FunFam | DNA helicase | 216 | 320 | - | - | |
| Seca12g00435 | 969 | SUPERFAMILY | Nucleic acid-binding proteins | 225 | 444 | IPR012340 | - | |
| Seca12g00435 | 969 | Gene3D | - | 216 | 320 | - | - | |
| Seca12g00435 | 969 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 209 | 909 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | MobiDBLite | consensus disorder prediction | 65 | 79 | - | - | |
| Seca12g00435 | 969 | MobiDBLite | consensus disorder prediction | 41 | 64 | - | - | |
| Seca12g00435 | 969 | MobiDBLite | consensus disorder prediction | 95 | 117 | - | - | |
| Seca12g00435 | 969 | FunFam | DNA helicase | 513 | 886 | - | - | |
| Seca12g00435 | 969 | CDD | MCM2 | 536 | 862 | - | - | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 574 | 589 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 634 | 648 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 686 | 698 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 662 | 675 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 713 | 721 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | Gene3D | - | 324 | 445 | IPR012340 | - | |
| Seca12g00435 | 969 | Pfam | Mini-chromosome maintenance protein 2 | 35 | 187 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Seca12g00435 | 969 | ProSitePatterns | MCM family signature. | 642 | 650 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Seca12g00435 | 969 | Pfam | MCM N-terminal domain | 224 | 317 | IPR027925 | - | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 356 | 368 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 333 | 350 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Seca12g00435 | 969 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 391 | 405 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Seca12g00435 | 969 | MobiDBLite | consensus disorder prediction | 1 | 185 | - | - | |
| Seca12g00435 | 969 | Pfam | MCM AAA-lid domain | 779 | 863 | IPR041562 | - | |
| Seca12g00435 | 969 | Gene3D | - | 513 | 886 | IPR027417 | - | |
| Seca12g00435 | 969 | MobiDBLite | consensus disorder prediction | 80 | 94 | - | - | |
| Seca12g00435 | 969 | Pfam | MCM OB domain | 323 | 444 | IPR033762 | - | |
| Seca12g00435 | 969 | Gene3D | - | 351 | 401 | - | - | |
| Seca12g00435 | 969 | MobiDBLite | consensus disorder prediction | 125 | 152 | - | - | |
| Seca12g00435 | 969 | SMART | mcm | 320 | 864 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | Pfam | MCM P-loop domain | 521 | 743 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | ProSiteProfiles | MCM family domain profile. | 533 | 739 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Seca12g00435 | 969 | MobiDBLite | consensus disorder prediction | 167 | 185 | - | - | |
| Seca12g00435 | 969 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 543 | 866 | IPR027417 | - | |
| Seca12g00435 | 969 | FunFam | DNA helicase | 351 | 401 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca12g00435 | Seca-Chr12 | 3760848 | 3766434 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca12g00435 | 19 | 964 | Core DNA Replication Machinery Family | AT1G44900 | 73.977 | 0.0 | 1359 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca12g00435 | K02540 | - | gmx:100799441 | 1640.17 |