Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00432 ATGCTTCATGCATTGATGAATCTTCTCTCTTTGTGTTTGAAGCCATTTGGGCGTGATGCTGATAAATTCGAGTCTGTTGGAGTTATTGGAAGCAGTTTTGGTGGCAGAGAAGGCAAAGATGGCTTGCTCTGGTTCCGAGATGTCGGAAAATATGGCTCCGGTGAATTCTCGATGGCAGTGGTGCAGGCGAACCAGGTTATCGAAGACCAGAGCCAGATCGAGTCTGGTCCTCTCGGCACCTTCGTCGGTATATACGATGGTCACGGAGGACCAGACGCATCGAGATACATATGCGATCACTTGTTTCGCCATTTTCAAGTTCATGTTTGTGCAGCAATATCGGCTGAGTCACACGGAATGGTGACAAGTGAGACAATTGAAAGGGCATTCCGCCAAACAGAAGATGGGTACACTGCCCTTGTGTCAGACTTATGGAATACTAGACCTCAAATTGCAAGTGCTGGGTCCTGTTGTCTGGTTGGAGTGATATTTCAGCAGACACTCTTTGTCGCAAACGTTGGAGATTCCCGTGTTGTATTGGGTAAGAAGGTTGGCAACACAGGTGGTATTGCTGCAATTCAGCTGTCTACAGAACACAATGCAAATATTGAGGCTATTAGGCAGGAGCTGAGAGAATTACACCCTCATGATCCACAAATCGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATATGAAAAATGCGCAGTTTAACCGCGAACCACTTAATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCTTGTCTGCTAGTCCCACTATTATTTCTCATTCTCTCCAACCAAATGATTCTTTCCTTATATTTGCATCAGATGGTTTATGGGAGCATCTAAGTAATGAAAAGGCTGTGGAAATTGTCAACAGCAATCCACATGCGGGTAGTGCCAAGAGGCTTATCAAGGCTGCCCTCCACGAAGCGGCAAGAAAACGAGAAATGCGATATTCAGATCTCCGTAAGATTGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATATCCAGAGGCACAGTGCAAGACCCAGCACTTTCACTTCGAAGCGCTCTCGATCATTGA 1155 0.445 MLHALMNLLSLCLKPFGRDADKFESVGVIGSSFGGREGKDGLLWFRDVGKYGSGEFSMAVVQANQVIEDQSQIESGPLGTFVGIYDGHGGPDASRYICDHLFRHFQVHVCAAISAESHGMVTSETIERAFRQTEDGYTALVSDLWNTRPQIASAGSCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGIAAIQLSTEHNANIEAIRQELRELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKNAQFNREPLNPKFRLPEPMNMPILSASPTIISHSLQPNDSFLIFASDGLWEHLSNEKAVEIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVQDPALSLRSALDH. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00432 384 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Seca12g00432 384 Pfam Protein phosphatase 2C 79 331 IPR001932 -
Seca12g00432 384 ProSiteProfiles PPM-type phosphatase domain profile. 52 361 IPR001932 -
Seca12g00432 384 SMART PP2C_4 42 359 IPR001932 -
Seca12g00432 384 PANTHER PROTEIN PHOSPHATASE 53 359 IPR015655 GO:0004722|GO:0006470
Seca12g00432 384 FunFam Probable protein phosphatase 2C 42 46 369 - -
Seca12g00432 384 CDD PP2Cc 56 361 IPR001932 -
Seca12g00432 384 SUPERFAMILY PP2C-like 64 362 IPR036457 -
Seca12g00432 384 Gene3D - 47 372 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00432 Seca-Chr12 3736515 3741113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00432 1 381 PP2C-type Phosphatase Gene Family AT4G38520 57.692 7.43e-157 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00432 K01102 - gmx:100790813 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00432 12 3736515 3741113 Seca12g00432 12 3736515 3741113 ECH
Seca12g00432 12 3736515 3741113 Seca6g04110 6 108741391 108748073 PCT