Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00427 ATGAAGGTGTCTGTCATGAAAAGACTTCGACATCCAAATATTCTTCTTTTTATGGGGGCAGTGACTTCACCTCAACGGCTCTGCATTGTGACCGAGTTTCTCCCACGGGGAAGCTTGTGTCGCTTGTTACACAGAAACACACCCAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGAGGCATAAATTATCTTCATCATTGTAACCCACCTATCATCCATAGAGATTTGAAGTCTTCAAATCTTTTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCGCGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGGAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCATCAGATGAGAAGTCTGATGTATACAGCTTTGGGGTGATATTATGGGAACTTGCAACTGAAAAGATCCCTTGGGACAATCTCAACTCAGTGCAGGTGATTGGAGCTGTAGGGTTCATGAATCAGCGGCTAGAAATTCCAAAAGATGTTGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCATAGTGATCCAACTCTCAGACCAACATTCCGGGAACTGCTTGAAAGGCTTAGAGAGCTGCAAAAACGATATGCCATTCAATTCCAGGCAGCCCGATCTGCTGGCGGGGAAAGCACCCAAAAGGAGTCCTAG 708 0.4548 MKVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGINYLHHCNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSVQVIGAVGFMNQRLEIPKDVDPRWASIIESCWHSDPTLRPTFRELLERLRELQKRYAIQFQAARSAGGESTQKES. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00427 235 PIRSF ILK 2 224 - -
Seca12g00427 235 Gene3D Transferase(Phosphotransferase) domain 1 39 222 - -
Seca12g00427 235 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 215 - -
Seca12g00427 235 PRINTS Tyrosine kinase catalytic domain signature 180 202 IPR001245 GO:0004672|GO:0006468
Seca12g00427 235 PRINTS Tyrosine kinase catalytic domain signature 31 44 IPR001245 GO:0004672|GO:0006468
Seca12g00427 235 PRINTS Tyrosine kinase catalytic domain signature 70 88 IPR001245 GO:0004672|GO:0006468
Seca12g00427 235 PRINTS Tyrosine kinase catalytic domain signature 136 158 IPR001245 GO:0004672|GO:0006468
Seca12g00427 235 PRINTS Tyrosine kinase catalytic domain signature 117 127 IPR001245 GO:0004672|GO:0006468
Seca12g00427 235 SMART serkin_6 3 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00427 235 SUPERFAMILY Protein kinase-like (PK-like) 3 218 IPR011009 -
Seca12g00427 235 FunFam PAS domain-containing protein tyrosine kinase family protein 35 226 - -
Seca12g00427 235 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00427 235 Pfam Protein tyrosine and serine/threonine kinase 3 209 IPR001245 GO:0004672|GO:0006468
Seca12g00427 235 CDD STKc_MAP3K-like 3 202 - -
Seca12g00427 235 Gene3D Phosphorylase Kinase; domain 1 1 38 - -
Seca12g00427 235 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00427 Seca-Chr12 3695491 3698964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00427 2 231 MAP Kinase Kinase Kinase AT5G49470 82.174 1.27e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca12g00427 PK_Tyr_Ser-Thr 3.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00427 - - gmx:100785569 441.039