Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00426 ATGGGAAGCTCAGGAAGAGAAGAGGTTATGAAGAAGATCCAAGAGCTAGAAGAAGGTCACGCTCACCTCAAGCAAGAAATGTCGAAGCTTAAGCTTTCCGATGGAAGAGGGAAACAGCACCATCGCCAGAGGTCTCACTCGGTGTCACCACAACGTTCCAGATTGGGTGATGGATCAGCTGCGTGGAAGAAAGGCACTTGTTCCTTCAAACAATCATCGCCTCTTCAGAGGGAGAGTCGTGGTGAACCTCAAAATGAAGCAAAAGGAAAAGGTGGTGGCGGTGCTCCTTCCGCTGTCAATTTTACTGAAGGCCAGTATCTCAATATTTTGCAGTCAATGGGACAATCTGTTCATATATTGGATCTTAACTATCGTATAATATACTGGAACCGTAGTGCTGAAAATCTATATGGTTATGCAGCAGAGGAAGCTCTAGGACAGGATGGGATTGAGCTGCTTGTAGACCCTAGAGACTTGACCTTAGCCTATGATACAGTGAACCGTGTCATGATGGGAGAGAGATGGACTGGGCAATTCCCAGTCAAGAATAAGATGGGAGAGAATTTTTTAGCTGTAGCAACTAATACACCTTTTTATGATGATGATGGAAGCTTAGTTGGGGTTATTTGTGTCTCAAGTGATTCACGGCCTTTTCTTGAAATGAGAGTTCCATTCTCAAGTGTAAAGAATGCTGAATCGGATTCAGGTTCCACCCGTCCTAGAAGTAGCATTACAAATAAACTTGGCCTTGACTCTCAACAGCCGCTTCAAGCTGCCCTGGCATCTAAAATTTCAAATTTGGCATCAAAGGTTAGTAATAAAGTTAAGTCAAGAATCTGGATGGGAGAAAATAATGTGGATCGTGAAGGTGGGAGTGGAGAAAGTCATCATTCTGAACATAGTTTATCAGAATCTGTTCTTACAGACCACAGAGAAGATGCTAATTCAAGTGGAGCTAGCACACCAAGAGGTGATTTGCCACAGTCCCCTTTTGGTGTATATGAGACTGAAGGAAAACCTATACACAAAAGCATACCCTCTAAGGCTGAAGCCTGGATTCAGAAGAAAACATTGTCATGGCCATGGAGGACAAATGAACGAGAAAAATCGGAGGCAAGGAACGTTTATGTTGCTGGGTCATGGAGGCAGAATGATCAAGGAAATGAGTCAGCTAATCAGAAGATTGTTTCTTCAGGTTTGAAGCAGGAAAGCAAGACAGGTGAAGGTAATCGCCCTGTTAACAATGAGGCTTCTGGATCCTGGTCCTCCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGTTGTGGGAGTGCTGGCAGCTGTGCTGTCAATAATAAAACTGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGTATATCATGCTGTGTGGTATGGATCAGATGTTGCCGTCAAGGTTTTCTCAAAGCAAGAATATTCAGAGGATGTGATACTGTCCTTCAAACAAGAGGTATGA 1533 0.4344 MGSSGREEVMKKIQELEEGHAHLKQEMSKLKLSDGRGKQHHRQRSHSVSPQRSRLGDGSAAWKKGTCSFKQSSPLQRESRGEPQNEAKGKGGGGAPSAVNFTEGQYLNILQSMGQSVHILDLNYRIIYWNRSAENLYGYAAEEALGQDGIELLVDPRDLTLAYDTVNRVMMGERWTGQFPVKNKMGENFLAVATNTPFYDDDGSLVGVICVSSDSRPFLEMRVPFSSVKNAESDSGSTRPRSSITNKLGLDSQQPLQAALASKISNLASKVSNKVKSRIWMGENNVDREGGSGESHHSEHSLSESVLTDHREDANSSGASTPRGDLPQSPFGVYETEGKPIHKSIPSKAEAWIQKKTLSWPWRTNEREKSEARNVYVAGSWRQNDQGNESANQKIVSSGLKQESKTGEGNRPVNNEASGSWSSSFNVNSTSSASSCGSAGSCAVNNKTDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHAVWYGSDVAVKVFSKQEYSEDVILSFKQEV. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00426 510 MobiDBLite consensus disorder prediction 383 424 - -
Seca12g00426 510 SUPERFAMILY PYP-like sensor domain (PAS domain) 108 211 IPR035965 -
Seca12g00426 510 Gene3D Phosphorylase Kinase; domain 1 457 510 - -
Seca12g00426 510 NCBIfam PAS domain S-box protein 103 214 IPR000014 -
Seca12g00426 510 SMART pas_2 104 171 IPR000014 -
Seca12g00426 510 MobiDBLite consensus disorder prediction 284 334 - -
Seca12g00426 510 CDD PAS 113 214 IPR000014 -
Seca12g00426 510 MobiDBLite consensus disorder prediction 229 250 - -
Seca12g00426 510 SUPERFAMILY Protein kinase-like (PK-like) 453 510 IPR011009 -
Seca12g00426 510 ProSiteProfiles PAS repeat profile. 102 173 IPR000014 -
Seca12g00426 510 Coils Coil 6 33 - -
Seca12g00426 510 MobiDBLite consensus disorder prediction 65 80 - -
Seca12g00426 510 Gene3D PAS domain 114 217 - -
Seca12g00426 510 MobiDBLite consensus disorder prediction 1 97 - -
Seca12g00426 510 MobiDBLite consensus disorder prediction 289 311 - -
Seca12g00426 510 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 221 510 - -
Seca12g00426 510 Pfam PAS fold 105 212 IPR013767 GO:0006355
Seca12g00426 510 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00426 Seca-Chr12 3691537 3694541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00426 7 510 MAP Kinase Kinase Kinase AT3G06620 52.778 1.68e-180 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00426 - - gmx:100800867 755.747