Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00426 | ATGGGAAGCTCAGGAAGAGAAGAGGTTATGAAGAAGATCCAAGAGCTAGAAGAAGGTCACGCTCACCTCAAGCAAGAAATGTCGAAGCTTAAGCTTTCCGATGGAAGAGGGAAACAGCACCATCGCCAGAGGTCTCACTCGGTGTCACCACAACGTTCCAGATTGGGTGATGGATCAGCTGCGTGGAAGAAAGGCACTTGTTCCTTCAAACAATCATCGCCTCTTCAGAGGGAGAGTCGTGGTGAACCTCAAAATGAAGCAAAAGGAAAAGGTGGTGGCGGTGCTCCTTCCGCTGTCAATTTTACTGAAGGCCAGTATCTCAATATTTTGCAGTCAATGGGACAATCTGTTCATATATTGGATCTTAACTATCGTATAATATACTGGAACCGTAGTGCTGAAAATCTATATGGTTATGCAGCAGAGGAAGCTCTAGGACAGGATGGGATTGAGCTGCTTGTAGACCCTAGAGACTTGACCTTAGCCTATGATACAGTGAACCGTGTCATGATGGGAGAGAGATGGACTGGGCAATTCCCAGTCAAGAATAAGATGGGAGAGAATTTTTTAGCTGTAGCAACTAATACACCTTTTTATGATGATGATGGAAGCTTAGTTGGGGTTATTTGTGTCTCAAGTGATTCACGGCCTTTTCTTGAAATGAGAGTTCCATTCTCAAGTGTAAAGAATGCTGAATCGGATTCAGGTTCCACCCGTCCTAGAAGTAGCATTACAAATAAACTTGGCCTTGACTCTCAACAGCCGCTTCAAGCTGCCCTGGCATCTAAAATTTCAAATTTGGCATCAAAGGTTAGTAATAAAGTTAAGTCAAGAATCTGGATGGGAGAAAATAATGTGGATCGTGAAGGTGGGAGTGGAGAAAGTCATCATTCTGAACATAGTTTATCAGAATCTGTTCTTACAGACCACAGAGAAGATGCTAATTCAAGTGGAGCTAGCACACCAAGAGGTGATTTGCCACAGTCCCCTTTTGGTGTATATGAGACTGAAGGAAAACCTATACACAAAAGCATACCCTCTAAGGCTGAAGCCTGGATTCAGAAGAAAACATTGTCATGGCCATGGAGGACAAATGAACGAGAAAAATCGGAGGCAAGGAACGTTTATGTTGCTGGGTCATGGAGGCAGAATGATCAAGGAAATGAGTCAGCTAATCAGAAGATTGTTTCTTCAGGTTTGAAGCAGGAAAGCAAGACAGGTGAAGGTAATCGCCCTGTTAACAATGAGGCTTCTGGATCCTGGTCCTCCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGTTGTGGGAGTGCTGGCAGCTGTGCTGTCAATAATAAAACTGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGACAAGGTTCTTGTGGAACTGTATATCATGCTGTGTGGTATGGATCAGATGTTGCCGTCAAGGTTTTCTCAAAGCAAGAATATTCAGAGGATGTGATACTGTCCTTCAAACAAGAGGTATGA | 1533 | 0.4344 | MGSSGREEVMKKIQELEEGHAHLKQEMSKLKLSDGRGKQHHRQRSHSVSPQRSRLGDGSAAWKKGTCSFKQSSPLQRESRGEPQNEAKGKGGGGAPSAVNFTEGQYLNILQSMGQSVHILDLNYRIIYWNRSAENLYGYAAEEALGQDGIELLVDPRDLTLAYDTVNRVMMGERWTGQFPVKNKMGENFLAVATNTPFYDDDGSLVGVICVSSDSRPFLEMRVPFSSVKNAESDSGSTRPRSSITNKLGLDSQQPLQAALASKISNLASKVSNKVKSRIWMGENNVDREGGSGESHHSEHSLSESVLTDHREDANSSGASTPRGDLPQSPFGVYETEGKPIHKSIPSKAEAWIQKKTLSWPWRTNEREKSEARNVYVAGSWRQNDQGNESANQKIVSSGLKQESKTGEGNRPVNNEASGSWSSSFNVNSTSSASSCGSAGSCAVNNKTDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHAVWYGSDVAVKVFSKQEYSEDVILSFKQEV. | 511 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00426 | 510 | MobiDBLite | consensus disorder prediction | 383 | 424 | - | - | |
Seca12g00426 | 510 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 108 | 211 | IPR035965 | - | |
Seca12g00426 | 510 | Gene3D | Phosphorylase Kinase; domain 1 | 457 | 510 | - | - | |
Seca12g00426 | 510 | NCBIfam | PAS domain S-box protein | 103 | 214 | IPR000014 | - | |
Seca12g00426 | 510 | SMART | pas_2 | 104 | 171 | IPR000014 | - | |
Seca12g00426 | 510 | MobiDBLite | consensus disorder prediction | 284 | 334 | - | - | |
Seca12g00426 | 510 | CDD | PAS | 113 | 214 | IPR000014 | - | |
Seca12g00426 | 510 | MobiDBLite | consensus disorder prediction | 229 | 250 | - | - | |
Seca12g00426 | 510 | SUPERFAMILY | Protein kinase-like (PK-like) | 453 | 510 | IPR011009 | - | |
Seca12g00426 | 510 | ProSiteProfiles | PAS repeat profile. | 102 | 173 | IPR000014 | - | |
Seca12g00426 | 510 | Coils | Coil | 6 | 33 | - | - | |
Seca12g00426 | 510 | MobiDBLite | consensus disorder prediction | 65 | 80 | - | - | |
Seca12g00426 | 510 | Gene3D | PAS domain | 114 | 217 | - | - | |
Seca12g00426 | 510 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
Seca12g00426 | 510 | MobiDBLite | consensus disorder prediction | 289 | 311 | - | - | |
Seca12g00426 | 510 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 221 | 510 | - | - | |
Seca12g00426 | 510 | Pfam | PAS fold | 105 | 212 | IPR013767 | GO:0006355 | |
Seca12g00426 | 510 | MobiDBLite | consensus disorder prediction | 8 | 34 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00426 | Seca-Chr12 | 3691537 | 3694541 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00426 | 7 | 510 | MAP Kinase Kinase Kinase | AT3G06620 | 52.778 | 1.68e-180 | 524 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00426 | - | - | gmx:100800867 | 755.747 |