Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00420 ATGGGTTGCATACTAGGCCTTAGAGTCTCTCCTACACACAGGAGAAAGGGGGTTGGACTAAAACTTGTTACCTCAATTGAAGAATGGATGAAGAGAAATGGGGCTGAATACACATTCCTAGCAACTGAAAAGAATAATGATGCCTCCAAAAACCTATTTACCAACAAATGCAACTATGCGAATCTCAGCTCACTTGTCATATTTGTCCATCCAACTAGTTTCCCTGCAAAGCATATTTCCAAGGATATTAAAATAGAGAAGGTAAATATAGACCAGGCAATTTCCTTGTATAAAAGAACCTTGAGGACCAATAAAGATTTGTATCCATTAGACATGGACATTATTTTGAAGGAGAAGCTCAGCTTAGGAACTTGGGTGAGTTATTACAAAGATGAAGGCATGCTTGACTTGCAGAGGAAGCTAATAGAGAGTGATGATCAAGACAACAACATTATTGCAAATGAAACCACAAGCTCATGGATCATCTTCAGCATATGGAATACTTGTGAGGCTTATAAGCTTCAATTGAAAAAGTCTCAGCCACTTAGGTTTCTTCATGCTACTTTGAATCGTGCAAGAGAGAAAATTTTCCCTTGTTTGAGAATGTCAGTGAGTGATGACTCATTGTGTAGACCTTTTGGGTTTCTTTTCCTCTATGGAATCCATGGAGAGGGAGAGAACCTTGGGGAGTTAATGGAATCTATATGGAGGTTCACATCAAGATTGGGGGAAAATTTGAAGGACTGCATAGTGATTGTGACTGAGTTAGGGTTCGGTGATCCACTTGTAAACCATATCCCACAAACAGCTTCAATGTCGTGTATCGATGATGTGTGGTACACAAAAAGACTTTCAAGTCACAGTGATGGAAAGGATGAATTGATGAGGATGAAGAGACAACTCGGAAATGTGTTTGTTGACCCTAGGGATTTTTAG 936 0.3942 MGCILGLRVSPTHRRKGVGLKLVTSIEEWMKRNGAEYTFLATEKNNDASKNLFTNKCNYANLSSLVIFVHPTSFPAKHISKDIKIEKVNIDQAISLYKRTLRTNKDLYPLDMDIILKEKLSLGTWVSYYKDEGMLDLQRKLIESDDQDNNIIANETTSSWIIFSIWNTCEAYKLQLKKSQPLRFLHATLNRAREKIFPCLRMSVSDDSLCRPFGFLFLYGIHGEGENLGELMESIWRFTSRLGENLKDCIVIVTELGFGDPLVNHIPQTASMSCIDDVWYTKRLSSHSDGKDELMRMKRQLGNVFVDPRDF. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00420 311 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1 142 IPR000182 GO:0016747
Seca12g00420 311 Pfam Acetyltransferase (GNAT) family 4 59 IPR000182 GO:0016747
Seca12g00420 311 CDD NAT_SF 2 40 - -
Seca12g00420 311 Gene3D - 1 70 - -
Seca12g00420 311 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 1 311 - -
Seca12g00420 311 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 54 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00420 Seca-Chr12 3634932 3637180 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Seca12g00420 Acetyltransf_1 1.9e-11 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00420 - - gmx:100814448 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00420 12 3634932 3637180 Seca12g00420 12 3634932 3637180 ECH
Seca12g00420 12 3634932 3637180 Seca12g00420 12 3634932 3637180 PCT