Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00399 ATGATGGCAAATAACTTAACGGGTCAACTGGTGGGCTCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATTTGGGGGGCATTATGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAACGAGATTCATGCCATGCTTTGTAATCACAAGTATTTCACAATCAATGTCAAGCCAGTACATTTGCCCAAAAGTGGTACTATTGTATTATTTGACCGCAAGATGCTGAGGAACTTTCGAAAGGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACAGTTAAAGAAGCTCATGAGCATTTAAAGGTTGGTAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAACTCGAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTCTGGAACACATTGTCCTTGTTCATTACCGTGAAACACAGGAGATGCAAGGTTCTCCTGTGACTCCTGTAAACTCAAACTCCACTTCTGCCTCTGATCCAACTGCACCGTGGATTTTATCAGAAGAAATAGATTCAGGGACCACAACTACATATGCTGGTGGGATTAATGACAATATAACAGTCAAAAACCATGAACTGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTGCAAATGATCTTAACACCTCTACTGCGCCTAATGGAGGCAAGGTTCCATATTTTGATCAACAAAATCAAATTTTACTAAATGACAGCCTCAGCAATGTGGCCAGCAATCCATCTGCAGAAATTCCATCTTTTAATAATTTAACTCAGCGAATTGCCGGGAACAACAGTGCTCCTTACAATATTTCAGAAAGTGTTAATCTTCAGACAATGGACAATCAAGTAATACCAAATGAGCAGAGGAATAATCCTGTCTCTTTAAGTGGCGTTGATTCCTTGACCACTTTGGTCAATGACAGATTGCAAAGTCAGGATAGTTTTGGAATGTGGGTGAACCAAATCATGTCCGATTCACCAGGTTCAGTAGATGAGTCGGGTCTTGAATCCTCAGTTTCATCCGTGCATGAACCATATCGGTCCCTGGTAGTGGATAATCAGCAACTTTCTCTGCCAGATCAAGTATTTCATCTCACTGATGTATCCCCCGCATGGGTGTCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGACTATCAGCACCTCTCAAAGTTCAATCTATTGTGTGTCTGTGGTGATGTAAGCGTTCCAGCAGAAGTTGTTCAGGATGGGGTCTATCGATGCTGGGTATCACCACATTCTCCTGGATTTGTGAATCTCTACTTGAGCTTTGATGGCCACAAGCCTATTAGCCAAGTTGTTAATTTTGAGTATCGTACACCTGTTTTGCATGATCCAGCAGCTTCTATGGAAGAGAAGGACAAGTGGGACGAGTTTCGACTTCAAATGAGGCTTGCTTATTTGCTCTTTGCTAAACAACATAATCTTGATGTTATCTCTAGTAAAGTACCACCTAATAGACTGAAGGAGGCTAGGGAATTTGCCTTAAAAACATCATTTATTTCTAATAGCTGGCAACACTTAATGAAGTCAACTGAAGACAACAAAATTCCATTTTCACAAGCAAAAGAGGCCCTATTTGAAATTGCATTTAAAAACAGACTAAAGGAATGGCTTTTGGAAAGAATTGTTTTAGGTGGTAAGACTACTGAATTTGATGCGCAAGGCCAAAGTGTAATCCATTTGTGTGCAATTTTGGGATATACTTGGGCCATTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAGATGGTTGCAACCCTGTTGTCTGCTGGGGCAAAGCCTAATTTGGTCACAGATCCAACTCCACAAAATTCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAGGGGTTATGATGGCTTAGCAGCTTATCTTTCAGAAAAGTCTCTTGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATGTCAGTGGCTCATTGGAAACTAGCACAACTGATCCAGTAAATTCTGAGAACCTTAGTGAGGACCAGGTGTACCTGAAAGAAACCTTGGCAGCTTACCGAACAGCTGCCGATGCAGCAGCACGCATACAAGCTGCATTTAGGGAGCGCTCCCTAAAATTGCGAACTAAGGCAGTTGAGTTTTGCAGTCCAGAGGCTGAAGCGCGCAAAATAGTTGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAATGATGGCGGCTGCTGCTCGCATTCAGCATACATTCCGTACATGGAAGATTCGTAAAGAATTTCTGAACATGCGCCGCCAGGCTATTAAAATTCAGGCTGCTTTCCGGTGCTTTCAAATGCGGAAGCAATATCGTAAAATTCTATGGTCGGTTAGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTAAAGAGAAAGGGCTTCCGTGGTCTGCAGCTTAACACTGTGGAAGCAACAGGAGATCAGAATCAGCAAAGTGATACAGAGGAGGAATTCTTTCGAGTTGGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAGTCCGCGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAGTACAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGTTGGAACGGGAATATGAACAACTCCTCAGTAGTGAAGTTGACATGGAACAGAAGATATAG 2772 0.426 MMANNLTGQLVGSEIHGFHTLQELDLGGIMEEARTRWLRPNEIHAMLCNHKYFTINVKPVHLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCYWLLDKSLEHIVLVHYRETQEMQGSPVTPVNSNSTSASDPTAPWILSEEIDSGTTTTYAGGINDNITVKNHELRLHEINTLEWDDLVVANDLNTSTAPNGGKVPYFDQQNQILLNDSLSNVASNPSAEIPSFNNLTQRIAGNNSAPYNISESVNLQTMDNQVIPNEQRNNPVSLSGVDSLTTLVNDRLQSQDSFGMWVNQIMSDSPGSVDESGLESSVSSVHEPYRSLVVDNQQLSLPDQVFHLTDVSPAWVSSTEKSKVLVTGFFHKDYQHLSKFNLLCVCGDVSVPAEVVQDGVYRCWVSPHSPGFVNLYLSFDGHKPISQVVNFEYRTPVLHDPAASMEEKDKWDEFRLQMRLAYLLFAKQHNLDVISSKVPPNRLKEAREFALKTSFISNSWQHLMKSTEDNKIPFSQAKEALFEIAFKNRLKEWLLERIVLGGKTTEFDAQGQSVIHLCAILGYTWAISLFSWSGLSLDFRDKFGWTALHWAAYCGREKMVATLLSAGAKPNLVTDPTPQNSGGCTAADLAYMRGYDGLAAYLSEKSLVEQFNDMSLAGNVSGSLETSTTDPVNSENLSEDQVYLKETLAAYRTAADAAARIQAAFRERSLKLRTKAVEFCSPEAEARKIVAAMKIQHAFRNFETRKMMAAAARIQHTFRTWKIRKEFLNMRRQAIKIQAAFRCFQMRKQYRKILWSVSVVEKAVLRWRLKRKGFRGLQLNTVEATGDQNQQSDTEEEFFRVGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALNQAKLEREYEQLLSSEVDMEQKI. 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00399 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 821 IPR027417 -
Seca12g00399 923 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Seca12g00399 923 SUPERFAMILY Ankyrin repeat 548 668 IPR036770 -
Seca12g00399 923 SMART CG_1_2 29 147 IPR005559 GO:0003677
Seca12g00399 923 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515
Seca12g00399 923 Coils Coil 886 922 - -
Seca12g00399 923 Gene3D - 531 675 IPR036770 -
Seca12g00399 923 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
Seca12g00399 923 SUPERFAMILY E set domains 371 457 IPR014756 -
Seca12g00399 923 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Seca12g00399 923 ProSiteProfiles IQ motif profile. 874 902 IPR000048 GO:0005515
Seca12g00399 923 FunFam Calmodulin-binding transcription activator 5 365 461 - -
Seca12g00399 923 SMART iq_5 769 791 IPR000048 GO:0005515
Seca12g00399 923 SMART iq_5 872 894 IPR000048 GO:0005515
Seca12g00399 923 SMART iq_5 792 814 IPR000048 GO:0005515
Seca12g00399 923 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Seca12g00399 923 Gene3D - 769 817 - -
Seca12g00399 923 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Seca12g00399 923 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 900 - -
Seca12g00399 923 SMART ANK_2a 645 676 IPR002110 GO:0005515
Seca12g00399 923 SMART ANK_2a 606 635 IPR002110 GO:0005515
Seca12g00399 923 FunFam calmodulin-binding transcription activator 5 536 676 - -
Seca12g00399 923 Gene3D Immunoglobulins 365 460 IPR013783 -
Seca12g00399 923 ProSiteProfiles IQ motif profile. 793 821 IPR000048 GO:0005515
Seca12g00399 923 Pfam Ankyrin repeats (3 copies) 555 635 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00399 Seca-Chr12 3476227 3485664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00399 29 906 CAMTA Transcription Factor Family AT3G16940 55.392 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca12g00399 CG-1 9.1e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00399 K21596 - gmx:100793970 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00399 12 3476227 3485664 Seca12g00399 12 3476227 3485664 ECH
Seca12g00399 12 3476227 3485664 Seca6g04063 6 108372445 108381565 PCT