Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00392 ATGGGGAGAGCTCCTTGTTGTGAGAAGGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTGACTGATTACATCCAAGAAAATGGTGAGGGATCTTGGAGGTCATTGCCCAAAAATGCAGGTTTGTTAAGATGTGGGAAGAGTTGTAGACTAAGATGGATAAACTACTTGAGATCAGATGTGAAGAGAGGGAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCAGTAATAGCAGGACATTTGCCAGGACGTACAGATAATGAGATAAAAAACTATTGGAATTCTCATTTGAGGAGAAAAATTTACTGCTTCATGAAGTCCTTAAATGAGTCTCTCCCTCCCATTGACATGGCTGCTGTTACTTCCAAAAGAAGAGCAAATAGAGCTACACCAACTCAACTAGTCAAGCAAGAGGACAATAACAACAACAACATTGCTTTCAACCAACAAAAGAAAGACAACATTCCTCAAGTTCAAGTTCAAGTTCAACCAACACATAAAAGAACAAAAGCAACTTCATCACAGAGTTTGAATGCTGCAGAGGCTGAAGTTACTTCTGGATCATGGGAATGTAACACAAGTGGTACAATTGCCTCATGTCCCAATTTGGATGAAGTTGAGGCATTGGGACCATATCAATGGTTAGATGAAGAAATTATGAAACTTAGTTACATGTTTGAAAGTGGGGTACTTGTAAGCCCTGATGGGAATGGCATTGTAGAGGATCCTAGCTGTGGTGGTGGAGTACTAGTGGGTGAAGAGATCATGGGAATGAATGAGGAGAGTAAAAGTGGTGTTTGGAGCTCATCAAATGCAGAGAGTGGAGAATGGAACACTACAAGCTGTTCATCTGTGAATTCTGCTTATGAGTATCAATGGCCTGATATGCATTTAGAAGGTAGTGTTAATAATCAGTGGGACCTTTATGGTGAAAACCAGAACGTTAATTACTTGTGGGGTACTAGCAGTTGTGAAGTAAGTGGCTTTTATCAGTGA 1041 0.4073 MGRAPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDMAAVTSKRRANRATPTQLVKQEDNNNNNIAFNQQKKDNIPQVQVQVQPTHKRTKATSSQSLNAAEAEVTSGSWECNTSGTIASCPNLDEVEALGPYQWLDEEIMKLSYMFESGVLVSPDGNGIVEDPSCGGGVLVGEEIMGMNEESKSGVWSSSNAESGEWNTTSCSSVNSAYEYQWPDMHLEGSVNNQWDLYGENQNVNYLWGTSSCEVSGFYQ. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00392 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca12g00392 346 Gene3D - 71 116 - -
Seca12g00392 346 CDD SANT 16 61 IPR001005 -
Seca12g00392 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca12g00392 346 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca12g00392 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca12g00392 346 FunFam Myb transcription factor 71 116 - -
Seca12g00392 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca12g00392 346 Gene3D - 13 66 - -
Seca12g00392 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca12g00392 346 SMART sant 66 114 IPR001005 -
Seca12g00392 346 SMART sant 13 63 IPR001005 -
Seca12g00392 346 CDD SANT 71 112 IPR001005 -
Seca12g00392 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca12g00392 346 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 193 - -
Seca12g00392 346 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00392 Seca-Chr12 3422263 3424701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00392 1 237 MYB Transcription Factor Family AT5G49330 52.720 1.17e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g00392 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00392 K09422 - gmx:100805532 460.685