Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00391 ATGGTGGATCTGAGTGGAAAAGGATCAGAGGGTGAAGATGCAAACCCTAACTCTGCTTCGTCAGGGAACAGTCCAACCACCAATGAACAGAAGAAAACCTGCGCCGATTGCGGAACCACCAAAACCCCTCTCTGGAGAGGTGGTCCTGCAGGACCTAAGTCACTTTGCAACGCTTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTTTGGGGATAAGCAAAGGGAACAACGAGGATGGACACAGGAAGGGGAAAAGGAGTAGTAGCAGCAAAGTTGGAGATAGTTTGAGCTTGAAACAGAGACTATTGGCTTTGGGAAGAGAAGTTTTGAATCAACGATCGCATTGGAAGAAATTAGGGGAAGAAGAACAAGCGGCGGTGTTGTTGATGTCACTATCTTATGGATCCGTTTATGCTTAA 423 0.4728 MVDLSGKGSEGEDANPNSASSGNSPTTNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEDGHRKGKRSSSSKVGDSLSLKQRLLALGREVLNQRSHWKKLGEEEQAAVLLMSLSYGSVYA. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00391 140 Gene3D - 28 94 IPR013088 GO:0006355|GO:0008270
Seca12g00391 140 SMART GATA_3 28 92 IPR000679 GO:0006355|GO:0043565
Seca12g00391 140 Pfam GATA zinc finger 34 68 IPR000679 GO:0006355|GO:0043565
Seca12g00391 140 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 28 68 - -
Seca12g00391 140 MobiDBLite consensus disorder prediction 11 37 - -
Seca12g00391 140 PANTHER OS01G0976800 PROTEIN 14 140 - -
Seca12g00391 140 ProSitePatterns GATA-type zinc finger domain. 34 59 IPR000679 GO:0006355|GO:0043565
Seca12g00391 140 MobiDBLite consensus disorder prediction 70 96 - -
Seca12g00391 140 MobiDBLite consensus disorder prediction 1 57 - -
Seca12g00391 140 ProSiteProfiles GATA-type zinc finger domain profile. 28 64 IPR000679 GO:0006355|GO:0043565
Seca12g00391 140 CDD ZnF_GATA 33 87 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00391 Seca-Chr12 3402814 3403861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00391 23 140 C2C2-Gata Transcription Factor Family AT3G06740 60.484 1.11e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca12g00391 GATA 6.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00391 - - aprc:113847917 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00391 12 3402814 3403861 Seca12g00391 12 3402814 3403861 ECH