Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00389 ATGATAGTCTCGTTTTCGCACCACTGTTGCTTCGGCATCGCCGTGTTAGCCATCTTCCTCTCAACGACGTCGTTTACGGATGCACAATCCTGCAACGGTATACTCGTTTCATACGCCTACTCCGGCGGAACGCGGTTGCCGCCGAACGTCACCGACCCGAAGAAGCAACCGTACCGGTTCGAGTCGACTCTGAGCGTCCTCAACAACGGTCTCGATGAACTCAAGTCTTGGAAGGTCTTCGTCGGGTTTCAGCATGATGAGTACTTGGTCTCTGCCTCCAATGCGGTCCTCGCCGACGGCACTACCCTCCCCGCCGCCGTCGGAAACGGCACGGTGTTCGCCGGCTATCCTATGACCGATCTCAAAACCGCCGTGGAGACCGCCGGCGACTTGACTCAGATGCAGGTTCAGATCGAGCTCGTCGGCACTGTCTTCGGTGTTGCGCCGCCAAGTGTACCCTTGCCTTCCTCCATCAACCTAGCTAATGATGGATTCGTCTGTCGGAAATCCACTGCTCAAGGGAAGAATGCGACTAATGTGTGTTGTACAAGAGATCCCAAGTTCAAAACAAACATCACCACAGATGAAGAGTTTTTGCCTCGTCAAAATGGTGATCTTACCATTATGTATGATGTGATCAGAACTTATGATTCCAATTACTGGGCAGAGGTTACGATTGCAAACCATAACCCTCTTGGTCGTCTTGACAACTGGAGGTTGAGCTGGGATTGGATGAATGATGAGTTTATATTTTCAATGAAAGGGGCTTATCCATCTGTTGTCGATGCTTCTGAGTGTATCTTTGGTAAGCAAGGTACATTCTACAGGGATCTTGACTTTGCCAATGTGTTGAATTGTGAAAGAAGGCCAACCATAATTGATCTCCCTCCCACTAAGTTCAATGATACAGACCTTGGGAAAATCCCTTCTTGCTGCAGGAATGGTACCATATTGCCACCATCCATGGACCCTAGCAAGTCCATGTCAAGATTCCAGATGCAGGTCTTCAAAATGCCGCCGGCACTCAACCGTTCCCAGCTTTCGCCACCACAGAACTGGAAGATCAGTGGTACACTCAACCCTAACTACAAATGTGGCCCTCCTGTTCGTGTGAGTCCTACTGAGAATCCAGATCCGTCAGGCTTGCCATCTAACAAAACTGTTATGGCAAGTTGGCAGGTTGTGTGCAATATAACAACTGCCAAGGGAACAGCAAGAAAATGCTGTGTCTCATTTTCAGCCTATTACAATGATTCTGTTATTCCATGCAAAACATGTGCATGTGGATGCCCCAGGAACACAGAAAGAACATGTAGTACTGGTGCACCAGCTATGTGGCTTCCACCAGAGGCACTGCTTGTTCCTTTTGAGAACAGAACTGCCAAGGCTGTTGCTTGGGCTAGTTTGAAACATCTACCAGTGCCAAAACCGATGCCCTGTAGTGATAACTGTGGTGTGAGCATCAACTGGCATTTATTTACAGACTATAATAAAGGATGGAGTGCAAGGGTCACACTTTTTAATTGGGGTGACACTAGTTTTGCTGACTGGTTTGCTGCTATACAAATGGACAAAGCAGCTGCAGGTTTTGAGAAAATGTATTCATTCAATGCAAGTGCCCTAGATATAGATGGTGTGAATAATACAATTATTATGCAAGGTTTGCCGGGATTGAACTACCTTGTGGCAGAAACAGATGGAGCTGACCCTCTGAAAGATCCTAGGGTACCTGGTAAACAACAGTCAGTAATCTCATTCACAAAGAAAACTACTCCTGGAATCAATGTAGCTGGTGGAGATGGGTTTCCCACTAAAGTCTTTTTCAATGGGGAGGAATGCTCTCTTCCTTCAATATTACCAAGCAGTGGTTTCAGGAAGGATTTTTCCTGGACTACTTCGATGCTCTTAACACTGTTGCTGATTGTCTTGATGCGGTAA 1938 0.4711 MIVSFSHHCCFGIAVLAIFLSTTSFTDAQSCNGILVSYAYSGGTRLPPNVTDPKKQPYRFESTLSVLNNGLDELKSWKVFVGFQHDEYLVSASNAVLADGTTLPAAVGNGTVFAGYPMTDLKTAVETAGDLTQMQVQIELVGTVFGVAPPSVPLPSSINLANDGFVCRKSTAQGKNATNVCCTRDPKFKTNITTDEEFLPRQNGDLTIMYDVIRTYDSNYWAEVTIANHNPLGRLDNWRLSWDWMNDEFIFSMKGAYPSVVDASECIFGKQGTFYRDLDFANVLNCERRPTIIDLPPTKFNDTDLGKIPSCCRNGTILPPSMDPSKSMSRFQMQVFKMPPALNRSQLSPPQNWKISGTLNPNYKCGPPVRVSPTENPDPSGLPSNKTVMASWQVVCNITTAKGTARKCCVSFSAYYNDSVIPCKTCACGCPRNTERTCSTGAPAMWLPPEALLVPFENRTAKAVAWASLKHLPVPKPMPCSDNCGVSINWHLFTDYNKGWSARVTLFNWGDTSFADWFAAIQMDKAAAGFEKMYSFNASALDIDGVNNTIIMQGLPGLNYLVAETDGADPLKDPRVPGKQQSVISFTKKTTPGINVAGGDGFPTKVFFNGEECSLPSILPSSGFRKDFSWTTSMLLTLLLIVLMR. 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00389 645 PANTHER COBRA-LIKE PROTEIN 7 26 642 - -
Seca12g00389 645 Pfam COBRA-like protein 220 399 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00389 Seca-Chr12 3383105 3386268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00389 31 629 COBRA Gene Family AT4G16120 69.269 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00389 - - gmx:100803929 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00389 12 3383105 3386268 Seca12g00389 12 3383105 3386268 ECH
Seca12g00389 12 3383105 3386268 Seca6g04045 6 108164677 108167170 PCT