Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00388 ATGAATCTCAGCAACGGTAAGGGATCCACGTCAACGGTTACTTCAACTGCGGCTATGAAATCCGGTGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTTGTGGTGGATGATGATCCCACGTGCCTCATGATCCTTGAGAAGATGTTGCGCACATGTCTCTATGAAGTTACGAAATGTAATCGAGCAGAGACTGCACTCTCAATGCTCAGAGAGAACAAGAATGGGTTTGACATTGTTATTAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTAGAGCACATTGGGTTGGAGATGGACCTTCCCGTTATTATGATGTCGGCAGATGATGGGAAAAGTGTTGTTATGAAGGGTGTAACGCATGGTGCTTGTGATTACTTAATTAAACCTGTTCGGATAGAGGCTTTGAAGAACATATGGCAGCACGTGGTTCGGAAGAGAAAGAATGAGTGGAGAGATACAGAGCAATCGGGGAGTGCTGAAGAAGGAGATCGACAACCAAAGGCTTCTGATGATGCAGATTACTCATCCTCAGCAAATGAGGGCAATTGGAGAAATGCAAAGAAAAGGAGAGATGAGGAAGAGGAAGCAGAGGAGAGAGATGACACATCCACATTAAAGAAACCACGGGTTGTTTGGTCTGTGGAACTCCACCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAAGCTGTTCCTAAAAAAATTCTGGAATTGATGAACGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGCCACTTGCAGAAATACCGATTGTATCTTAGAAGGCTGAGTGGAGTTTCTCAGCACCAGAATAACTTGAACAACACCTTTCTCAGCCCACAAGAGGCAACATTTGGGACAATTTCTTCAATTAACGGAATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGGTCAACTGCAAAAGCAGGCGTACCCATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAGCCCAAGGTTAAGATTTGGAGAAGGGCAACAGCAACATTTAAGCAGTAGTAAACCAATAAACTTACTTCATGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAGTTTGCACCAGTCTCCCCAATCCCTTGGCAACTTGAATATGCGAGTCAATGCTTCTGCTACACAGAGCAACCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGTTAAGTGAAAATACCGGTCCTCGTGTTCCTAGACATCCATCATCTTTGGGGCAGCCTACTGTATCAAATGGAATTTCTGATGGTCTTCTGGGCAGAAATGGGATTGCTGGTAGTAACAGAGCACCTTCTTATAATCCTGTTCCACAGAGCTCTTCATTGTTGAGTTTTCCCATGAATCAGAGAACTGATATGTCTGTCAATAATTTTCCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCATTTCAAGAGGAAGTTACTTCGGGAATTAAAGGATCTGCTGGATTTCCAAGTTATGATATTTTTAATGAACTGCACCATCAGAAGTCTCAGGATTGGGACATAACAAACCCAAGCCTAACATATGATTCCTCCCATGCAAATCCTTTACAAGGTAACATTGATGTCTCTCCATCGGTTTTAGTCCATCAGGGCTTTGCTTCTGCCCAACAGACTGGACAAAGCAGAGATGCCACTTTGATTGGAAAAGCTATTTTCTCCCTGGGAGAAGGCTTGGAACAAGGTAATCTCCAAAATGCTGGTCAACACCTCAATACCCTACTTGTTGACAATTCAGTAAGGGTTAAGACTGAAAAAATTCCTGATTCAAGCTCCCATACAAACTTCTTCCCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCACTCCTGAAACAGGTTGGTCCTTCGTAA 1977 0.4451 MNLSNGKGSTSTVTSTAAMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSMLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWRDTEQSGSAEEGDRQPKASDDADYSSSANEGNWRNAKKRRDEEEEAEERDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNTFLSPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPLMDQRNLFSFESPRLRFGEGQQQHLSSSKPINLLHGIPTNMEPKQLASLHQSPQSLGNLNMRVNASATQSNPLLMQMAQSQPRGQMLSENTGPRVPRHPSSLGQPTVSNGISDGLLGRNGIAGSNRAPSYNPVPQSSSLLSFPMNQRTDMSVNNFPLGSTPGISSITTKGSFQEEVTSGIKGSAGFPSYDIFNELHHQKSQDWDITNPSLTYDSSHANPLQGNIDVSPSVLVHQGFASAQQTGQSRDATLIGKAIFSLGEGLEQGNLQNAGQHLNTLLVDNSVRVKTEKIPDSSSHTNFFPEHYGQEDLMSALLKQVGPS. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00388 658 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Seca12g00388 658 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Seca12g00388 658 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Seca12g00388 658 MobiDBLite consensus disorder prediction 153 176 - -
Seca12g00388 658 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Seca12g00388 658 FunFam Two-component response regulator 209 272 - -
Seca12g00388 658 Gene3D - 33 168 - -
Seca12g00388 658 SUPERFAMILY CheY-like 32 156 IPR011006 -
Seca12g00388 658 PIRSF RR_ARR_type-B 13 657 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca12g00388 658 CDD REC_typeB_ARR-like 35 149 - -
Seca12g00388 658 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 383 IPR045279 GO:0009736
Seca12g00388 658 MobiDBLite consensus disorder prediction 189 210 - -
Seca12g00388 658 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Seca12g00388 658 FunFam Two-component response regulator 33 170 - -
Seca12g00388 658 MobiDBLite consensus disorder prediction 419 451 - -
Seca12g00388 658 SMART REC_2 33 145 IPR001789 GO:0000160
Seca12g00388 658 MobiDBLite consensus disorder prediction 419 471 - -
Seca12g00388 658 Gene3D - 210 272 - -
Seca12g00388 658 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Seca12g00388 658 MobiDBLite consensus disorder prediction 153 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00388 Seca-Chr12 3376865 3381892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00388 68 656 Response Regulator Gene Family AT3G16857 50.625 1.49e-177 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca12g00388 Response_reg 6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00388 - K14491 gmx:100814930 1169.84