Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00374 AAAATCAACCCGACCCGAAACCTAGCTTGTTTCCCTCTCAGCTTCGTTGCGAACCCAACCCTCCCTTTTTCTCCTCTCCGTCTCTTCTCTTGGCTGCGTTGCGCCTTGTGCATTAGAGCTTCCTTCACCTTCAAGTTCAACTGTTTAGGTATTACTATCACTATGGCTTCAACAGACATCAGAGGCATTTTGACTGCTTTCAATCCTTCTCTCGACTTCTTCGCCATCACCACCGGAGACGGTCGCGTTAAGGTATGGGACACACTCAAAGGTCAGGTCCAGACTGAGTTTGCAGACATAACTTCAACTCAATCAACTTCTATATATGATAGATCCTTCAACGGCCATCTTTCAGTTGATTATACATGCATCAAGTGGTTGTCCTTCGAAAGAAAGAGGAAAAGGAAGCATTTATCCTCATTGTTAGTGCTTGGAACCGGTAGTGGTGATGTTTTAGCACTCGACGTGTCTGCTGGTCAATTGTCTTGGAAACTTAGTGACTGTCATCCTGGAGGTGTGAGAGCCATTTCATCTTCGGCAAATGCATCATGCATTTATACTGCAGGTGCAGATGGGATGATATGCATGATAGATTTCATGAATGGAAATGTGCTGGAGAAATTTAAAGCTTCTTCGAAGGCAGTATCCTGTATGACTGTTTCTTCCGATGGGAAGACATTAGCTACTGCAGGAGCACAATTGAAGATTTTTGACTGTTCTAATCACAAAAAGATTCAAAAGTTTTCTGGTCACCCTGGTTCTGTTCGGTGTATGGTCTTTACTGATGATGGAAAGTTTATCCTCTCGTCTGCTGTTGGAGAAAGATATGTTGCTGTTTGGAGGATAGATGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCACCCCACTGTCTTTCTCGATAGCAGGTGCATTGATAGAGGGGAACATGATGAGGCTGGCATATGTGTTTTGGCCATCTCAGAAGTTGGTATTTGTTATTTATGGTTTGGAAATAGTATTGAAGAACTACGCAATGCAAAACCCACAAACATATCATTATCTTTAGAAGACATGTCCTCCAAAAATTACAAGGGAGCACTGCCTGCAATATACGCTGCAAAATTACAAGGCATCCAGAAGCCAGCTTCTGGGCAGGTTTTTCTTGTTTCTGGGCTGCTTGTGAAACCATCATTTCAAAAAATTGTAATACATTCCGGTACAGATGTAAAGTTGAATGTCTCTAATGAAGGAGTTCTTCTTCCAATGAGTCAATCTCTTGTCAAATCTAAGAAGGGGACAGTTACTGCCCTAGATCGTGCTAATGCTGAAGATGCCTTGCTTCCGATTCCTAAAGTTTTTTATTCTCATGAGAAAGAGAAAACATTTCAAGATTCTTTGGACAAAGATGTAACAGATGATTTGCATAGAAGTAGTAAAGCTGATTCTTTTGCGATAGAAGATGATATGGTCCAAAGTGAGATTGATGTAATTTGCATGGAGGACCGGATGAGATCACTGGGGATGCTTTGCAGTGAAAGTGATTGTGCATCAAACTTTGAACTTTGTTCTACATTGTCAAAGGGTATTGATCTGGAAGCTATTCTTCCCACGAAAAAGATAAGAGCAGCCGTTTTGTCTATGGAGCCAACTGAAGCATGCAAGCTGCTAGAAGCGTTGCTAGCTACATGGCAATCAAGGTTTTTATTCCTTTTCCTTAACTTTCCTCTACTTGATTACTGGATCATTTGTGATATCTTCTCTTTATTCAACAGGTCATCTAGCGGAAAGTATGTTCTTCCATGGATATATAGCATATTAGTAAATCATGGTCATAATATCATTGCTCAGGAATCTGTGACATGTATGCTTGAATCCTTATACAAGATTACCAATTCTAGAGGGGCAGCTCTTCAGCCCTTATTACAATTATCAGGTCGTCTACAACTGGTGACATCACAGATTGAAAAGGCTCAGACAATAAGTCATTCGGTGCATGATCCCCAAATAGAAGAAGATGAGGATGAGGATGAGAATGAGGATGAATATTATCATGAGGACGAAGATGATGCATCTGAAATAAGCAGTGATGATAAAAGCTAG 2091 0.4099 KINPTRNLACFPLSFVANPTLPFSPLRLFSWLRCALCIRASFTFKFNCLGITITMASTDIRGILTAFNPSLDFFAITTGDGRVKVWDTLKGQVQTEFADITSTQSTSIYDRSFNGHLSVDYTCIKWLSFERKRKRKHLSSLLVLGTGSGDVLALDVSAGQLSWKLSDCHPGGVRAISSSANASCIYTAGADGMICMIDFMNGNVLEKFKASSKAVSCMTVSSDGKTLATAGAQLKIFDCSNHKKIQKFSGHPGSVRCMVFTDDGKFILSSAVGERYVAVWRIDGAKKQSASCVLAMEHPTVFLDSRCIDRGEHDEAGICVLAISEVGICYLWFGNSIEELRNAKPTNISLSLEDMSSKNYKGALPAIYAAKLQGIQKPASGQVFLVSGLLVKPSFQKIVIHSGTDVKLNVSNEGVLLPMSQSLVKSKKGTVTALDRANAEDALLPIPKVFYSHEKEKTFQDSLDKDVTDDLHRSSKADSFAIEDDMVQSEIDVICMEDRMRSLGMLCSESDCASNFELCSTLSKGIDLEAILPTKKIRAAVLSMEPTEACKLLEALLATWQSRFLFLFLNFPLLDYWIICDIFSLFNRSSSGKYVLPWIYSILVNHGHNIIAQESVTCMLESLYKITNSRGAALQPLLQLSGRLQLVTSQIEKAQTISHSVHDPQIEEDEDEDENEDEYYHEDEDDASEISSDDKS. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00374 696 SUPERFAMILY WD40 repeat-like 66 335 IPR036322 GO:0005515
Seca12g00374 696 MobiDBLite consensus disorder prediction 657 696 - -
Seca12g00374 696 MobiDBLite consensus disorder prediction 666 689 - -
Seca12g00374 696 Pfam WD domain, G-beta repeat 244 280 IPR001680 GO:0005515
Seca12g00374 696 SMART WD40_4 201 238 IPR001680 GO:0005515
Seca12g00374 696 SMART WD40_4 158 198 IPR001680 GO:0005515
Seca12g00374 696 SMART WD40_4 241 281 IPR001680 GO:0005515
Seca12g00374 696 SMART WD40_4 45 87 IPR001680 GO:0005515
Seca12g00374 696 Gene3D - 52 199 IPR015943 GO:0005515
Seca12g00374 696 PANTHER OS03G0300300 PROTEIN 55 566 - -
Seca12g00374 696 Gene3D - 200 359 IPR015943 GO:0005515
Seca12g00374 696 Pfam Dip2/Utp12 Family 533 648 IPR007148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00374 Seca-Chr12 3270762 3278761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00374 163 280 U-box Gene Family AT2G33340 30.328 1.86e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00374 K14546 - gmx:100815458 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00374 12 3270762 3278761 Seca12g00374 12 3270762 3278761 ECH