Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00365 ATGGTTCTTTGTTCAATCTACATTCTCTCTCTCTCTCTGTCTCTCCTGAATAATGAGTTTTTCTTTTTGGTTTCTATTTTCTCTTCTGTAGCCTTGCAACTTCATCCAGATAAGAACAAACATCCAAAGGCTGAAATTGCTTTCAAGCTTGTTTCTGAGGCATATACATGTCTCTCTAATGCAGCAAAGAGAAAAGCTTTTGACTTGGAGAGGTATAAGCATCTCTGCTTTGAGTGCAGAAGAATCCCATATACATCATCCGGCAATTCTAATGGTTCAGGTTTCAAGGCATGGGATATTATCAGCAGGTCAAGATCTTTTAAACTTTGGAGAAATATTAGGGACATGAGAGAGAGATTCAAGGAGGAGGCTAAGGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCACTCTACAATCCGGTTGGTTATCTACACAGAAGCAAGTCACTGCATAGATTTGAGAAAGAAACCCCTGTTTTCAATCCATCAGACTACTTGTACCAAGGCTACCCTCACCTAAGGGGCCATGTTTACAAGAATTCTTCGACATTTTGGTACTTGCAGACAATTAGTATGCTGCACAATGGAAAGAGAGGAGTGCAGAACGCCTCCCCAGTTTTTGAGGTCAAAACAAGGAATACGTTTACAGACAAATTTGCTTTTGTCCCATCATCATGA 696 0.3994 MVLCSIYILSLSLSLLNNEFFFLVSIFSSVALQLHPDKNKHPKAEIAFKLVSEAYTCLSNAAKRKAFDLERYKHLCFECRRIPYTSSGNSNGSGFKAWDIISRSRSFKLWRNIRDMRERFKEEAKVIENCLRTNSMSRKESPLYNPVGYLHRSKSLHRFEKETPVFNPSDYLYQGYPHLRGHVYKNSSTFWYLQTISMLHNGKRGVQNASPVFEVKTRNTFTDKFAFVPSS. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00365 231 PANTHER BNAC03G44070D PROTEIN 28 192 - -
Seca12g00365 231 PRINTS DnaJ domain signature 27 42 IPR001623 -
Seca12g00365 231 PRINTS DnaJ domain signature 43 63 IPR001623 -
Seca12g00365 231 SUPERFAMILY Chaperone J-domain 27 71 IPR036869 -
Seca12g00365 231 Pfam DnaJ domain 27 68 IPR001623 -
Seca12g00365 231 CDD DnaJ 31 60 IPR001623 -
Seca12g00365 231 Gene3D DnaJ domain 24 127 IPR036869 -
Seca12g00365 231 ProSiteProfiles dnaJ domain profile. 4 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00365 Seca-Chr12 3210999 3212789 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00365 - - gmx:100801809 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00365 12 3210999 3212789 Seca12g00365 12 3210999 3212789 ECH
Seca12g00365 12 3210999 3212789 Seca6g04030 6 108011778 108013042 PCT