Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00364 ATGGTTCATTTTCCATATTCCTTTGTCAATGGATTGGCGAGAACTGTGTCAATCAAGAAAGAGAAGAATTGTCAAAAACATGATGGAAGGAAAGCTGTGGAAGAATTGGCAAAGGAAGCAAAGAAGAATGAATTGTTATTGAGTTCATCTGGAGTTGTTAAGTCAACCAAGGCCAACAGTTTTGTTTCTGTGTTCACTAATAAGGGCCAGAAAGGAGTCAACCAGGATTGTCTTGTGGTTTGGGAGGAATTTGGTTGCCAACAAGACATGATGTTCTGTGGAATTTTTGATGGACATGGCCCTTGGGGACACTTTGTAGCCAAAAGGGTCAGGAAGCTAGTACCAGCCTTTTTACTCTGCAATTGGCAGGAAAATCTAGCTGCAACTTCAATTGACCTGGATTTTAAAATGGAAGCAGACCTTGGATTGGACATATGGAAACAATCCTACCTAAAGACTTTCTCTGCCGTTGACCAGGATCTGAAGCAGCACACTGGGATTGATTCCTTTCAAAGTGGCACTACAGCTTTGACAATTATCAAACAGGGTGAATATCTTAGCATAGCAAATGTAGGTGATTGTAGGGCAGTCTTGGTAACCACTTCAGAGGATGGCACATTAACTCCAATTCAACTTACCACTGACTTCAAGCCAAATTTACCACAGGAAGCAGAGCGCATAAAACAATCCAGAGGGCGGGTATTTTGTTTGGAAGATGAACCAGGAGTGTACAGGGTCTGGATGCCAAATGCCAAAACACCAGGACTAGCAATATCTAGAGCTTTTGGTGACTACTGTATGAAGGACTTTGGAGTAATCTCAGTGCCAGATGTAACACACAGAAAACTTTCCACCAGGGATCAATTTATCATCTTGGCAACAGATGGGGTATGGGATGTTATATCTAACCAAGAAGCAATGAAGATTGTTTCTGAAACGCAACATAAAGAAAAAGCAGCTAAGAGGCTAGTTGTTCCTGAATCACTGGATGGGAAGCCCTTTACTAATCCTGCAGTCCTTTGTGCTTCTTCCACTGATGAGGAATTTTTAAAATTTAAATGCAGTGAGGGAAGGGAAATATATTTTAAACAGTATGGAGAATATATGATCCATAAGATTTGGCGCGATGATGTTTTACCATGCCGTGTTTATCTTCGCCACTGTGTCCTGGCTGCAAAAAACCTTGGGGGTGAAGCTTACAATAACTTTTTGGATCATACATTCCTTGCTGACCGTAAAACAACCATACGTCAGTACTTTGAAAAAGTCGGCACAAGCATAATGGAAGAAGAGCCCCCTGAGTCTTTGAAAACCCGTTACGGTGGTTAA 1329 0.4153 MVHFPYSFVNGLARTVSIKKEKNCQKHDGRKAVEELAKEAKKNELLLSSSGVVKSTKANSFVSVFTNKGQKGVNQDCLVVWEEFGCQQDMMFCGIFDGHGPWGHFVAKRVRKLVPAFLLCNWQENLAATSIDLDFKMEADLGLDIWKQSYLKTFSAVDQDLKQHTGIDSFQSGTTALTIIKQGEYLSIANVGDCRAVLVTTSEDGTLTPIQLTTDFKPNLPQEAERIKQSRGRVFCLEDEPGVYRVWMPNAKTPGLAISRAFGDYCMKDFGVISVPDVTHRKLSTRDQFIILATDGVWDVISNQEAMKIVSETQHKEKAAKRLVVPESLDGKPFTNPAVLCASSTDEEFLKFKCSEGREIYFKQYGEYMIHKIWRDDVLPCRVYLRHCVLAAKNLGGEAYNNFLDHTFLADRKTTIRQYFEKVGTSIMEEEPPESLKTRYGG. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00364 442 Gene3D - 47 338 IPR036457 -
Seca12g00364 442 ProSiteProfiles PPM-type phosphatase domain profile. 61 385 IPR001932 -
Seca12g00364 442 SMART PP2C_4 52 342 IPR001932 -
Seca12g00364 442 CDD PP2Cc 61 324 IPR001932 -
Seca12g00364 442 Pfam Protein phosphatase 2C 85 324 IPR001932 -
Seca12g00364 442 PANTHER OS05G0358400 PROTEIN 323 442 - -
Seca12g00364 442 SUPERFAMILY PP2C-like 55 324 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00364 Seca-Chr12 3193943 3205586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00364 1 324 PP2C-type Phosphatase Gene Family AT3G05640 61.702 1.37e-146 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00364 - - gmx:100814087 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00364 12 3193943 3205586 Seca12g00364 12 3193943 3205586 ECH
Seca12g00364 12 3193943 3205586 Seca6g04027 6 107984491 107987602 PCT