Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00362 ATGTGTGGTGGTGCAATTATTTCTGATTACATAGATGACAACCCCAACCTTGGTTGCCGGAGATTGACCACCGACGACATCTGGTCAGAGCTTCACACTTTCTCTGACCTCCTTGGTTTCGAAGTCGCCTCTTCTTCCCACCACCAATCACCCTTCTCCCACCTTCATCATCCCAACCTCCCTCTAAAACCAAACAACAAAGGTACGTTACGTACTACCTATTTCATTATTTTTTTTAGTATTTCCACGACTATTATTTCCTCCCATCCCCTTACTAGATGCCTTTTCTTGTTGGAGAAGAAAAAAGTGGTGGTAGCAAATAAGGAAAGAGGCAAGAGTGAGGGTGGTAAGTGTAAGCGGGTTCGAAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCTGAGATAAGGGACCCACACAAGGGTGCACGTGTCTGGCTCGGCACCTTCAACACCGCCGAAGAAGCTGCCCTAGCTTACGACGCTGCCGCTAAGCGCATCCGCCGAGACAAGGCTAAGCTCAACTTTCCAGACAAGAAGCCTTGCCTCACTCAGCCCAGTGGGCCACCCGAGGCCCACGGTGACCAGGATCCTGATCAGCTGAAGCATCAAATCGAATCATTCCTGGGCTTAGAATTAGAGCATGATCAGGCTCAGGCTCATGAGGTGCTTGGTATTGGTGAATGGGACAGCAGGGACCTGTGGACGCTGGACGACATCGTTATGTCCAACCGTCACCTGTTTTCAGGCGGAATTTGA 774 0.5052 MCGGAIISDYIDDNPNLGCRRLTTDDIWSELHTFSDLLGFEVASSSHHQSPFSHLHHPNLPLKPNNKGTLRTTYFIIFFSISTTIISSHPLTRCLFLLEKKKVVVANKERGKSEGGKCKRVRKNVYRGIRQRPWGKWAAEIRDPHKGARVWLGTFNTAEEAALAYDAAAKRIRRDKAKLNFPDKKPCLTQPSGPPEAHGDQDPDQLKHQIESFLGLELEHDQAQAHEVLGIGEWDSRDLWTLDDIVMSNRHLFSGGI. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00362 257 MobiDBLite consensus disorder prediction 181 203 - -
Seca12g00362 257 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Seca12g00362 257 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Seca12g00362 257 Gene3D AP2/ERF domain 125 183 IPR036955 GO:0003700|GO:0006355
Seca12g00362 257 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Seca12g00362 257 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Seca12g00362 257 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Seca12g00362 257 SUPERFAMILY DNA-binding domain 125 183 IPR016177 GO:0003677
Seca12g00362 257 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Seca12g00362 257 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Seca12g00362 257 PANTHER DNA-BINDING DOMAIN 107 196 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00362 Seca-Chr12 3177644 3179367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00362 1 248 AP2-EREBP Transcription Factor Family AT3G16770 38.851 4.23e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g00362 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00362 K09286 - cave:132186034 169.859