Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00361 ATGTGTGGGGGTGCAATCATTTCTGAATCTGAGGTTGTAGATGTGAACCCTAATCCTCCTAACCGTGGCCGGAGATTGACCACCGAGGACCTCTGGACTACGTCTGAGGAGGGTGACACTTTCTCTTACCTTCTTTGTTTCGACGGTACCGCTACCTCTTCTTCAGAAACCTACTTTCACTTCGATCATCCACAGCTCCCTTTTTTTCCAAACAACCACAAAGCTGCTGCAGCAGTGGGGACATGTGATCAGAAGGTGGAGAAGAAGAAAAGAGTGGTGGTTGAGAAGAAGGGTGAGCAGCGGGTTCGGAAGAATTTGTACAGAGGAATCAGACAAAGGCCATGGGGCAAGTGGGCTGCTGAGATTAGGGATCCACGTAAAGGCATAAGGGTCTGGCTTGGCACCTTCAACACTGCCGAAGAAGCCGCCCTCGCTTACGACGGCGCCGCCCTTCGCATCCGCGGAAACAAGGCCAGGCTCAACTTTCCAGCCAAGATCAAGCGCTGCCTCAGCCCAGAGCCCACTCAGCCCACTGGGCCTCCGCCTTGCATTCCCCAGGCCCAGGATCCTGATCAGCTGAAGCAACAAATCTCCACCCTTGAATCATTCCTTGGTTTGGAGCATGAGCAGCCTCAACCTCAGCCTGAGATGCAGTGGGACTCACTCTACAGGGACCTGTGGACGCTAGACGACGTCGTTATGCCCAACCGTCACCTGTTCTGA 723 0.5394 MCGGAIISESEVVDVNPNPPNRGRRLTTEDLWTTSEEGDTFSYLLCFDGTATSSSETYFHFDHPQLPFFPNNHKAAAAVGTCDQKVEKKKRVVVEKKGEQRVRKNLYRGIRQRPWGKWAAEIRDPRKGIRVWLGTFNTAEEAALAYDGAALRIRGNKARLNFPAKIKRCLSPEPTQPTGPPPCIPQAQDPDQLKQQISTLESFLGLEHEQPQPQPEMQWDSLYRDLWTLDDVVMPNRHLF. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00361 240 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Seca12g00361 240 PANTHER DNA-BINDING DOMAIN 88 185 IPR044808 GO:0003700|GO:0009873
Seca12g00361 240 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Seca12g00361 240 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Seca12g00361 240 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Seca12g00361 240 FunFam Ethylene-responsive transcription factor 2 105 164 - -
Seca12g00361 240 Pfam AP2 domain 107 155 IPR001471 GO:0003700|GO:0006355
Seca12g00361 240 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
Seca12g00361 240 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Seca12g00361 240 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00361 Seca-Chr12 3162192 3163744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00361 1 233 AP2-EREBP Transcription Factor Family AT3G16770 38.828 1.51e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g00361 AP2 6.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00361 K09286 - qsu:112006022 166.777