Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00355 ATGGCGGCCGGATTCGATAGCAGCCATGAGAAGAAGAAGAAGGTCGCCATTCTCGGCGTTTCTTCGATCCTTCTGGTGGCTATGGTAGCTGCCGTCGCCGTTGGAGTTAACAGCGGTGGCGAAGTGAGTAACGAAGGGAATGACGGTAGCCAGATCGCCAGATCTCAAAAGAACGTGCAGGCGATCTGCGAAAATGTTGAATTCAAAGAAACCTGCCAGAAGAGTCTCTCAAAAGCATCCAATGGAACTACAGACATGAAGGAGTTGATCAAAGCCGCATTCAATGCCACTGCCGAGGAACTCGTTGACAGAATTCATAACTCCACATTGTACCACGAGTTGGCTAAGGACAACATGACAAGACAAGCCATGGATATTTGCAAGGAAGTCCTCGGCTATGCCGTTGATGACATTCACAAATCCATTCACATTATGGACAAATTTGACATCAACAAGCTTAGTGAGTACGCCTATGACCTCAAGGTTTGGCTCGCTGGTACCCTCTCTCACCAACAAACTTGTTTGGATGGATTTGTTAACACAACCGACGCTGGCCAAACAATGGTTAAGGTCCTCAACACCACTTTGGAACTCAGCAACAACGCCTTGGATATAGTCAATGGTGTCTCCACTCTCTTGAAGGGTCTTAACTTGACCGCCTTCACCACCGCCTACACCACCACCTACCACTCCTCCGCCTCCGCAACCAACAGGAAGCTTCTCGGCGGCGATGGTATCCCTTCATGGGTGGGAGAAGGCCAGAGGCGTCTCCTCGAGCTCGAGTCTCAAGGAAACGTTCAGGCTGACGTCATCGTTGCTCAAGATGGAAGTGGTCAGTTCAAAACACTCACAGAGGCCCTTAATCTCGTTCCTAAGAATAACAAGAAGCCTTTTGTCATCTACGTCAAGGCCGGTATCTACAATGAGTATGTTTCTTTGGTCAAGCACCAGACCCATGTCACTATCATGGGAGAGGGTCCCACAAAGACCAGATTCACCGGTAGCAAAAACTATGTTGATGGCTTGCAAACCTACTACACCTCAACCTTCAGTGTGAATGCTGCTAACTTCATGGCAATGCACGTTGGGTTCGAGAACACAGCTGGAGCTGAGAAGCACCAGGCCGTTGCACTTAGAGTAACCGCTGATAAGGCTGTTTTCTATAACTGTCAAATGGATGGATTCCAAGACACGCTTTATGTTCAATCCCAACGCCAATTCTACCGTGACTGTATTGTCTCTGGCACCATTGATTTTGTGTTCGGTGACGCAGTTGGAGTGTTCCAGAACTGCAAGTTCATTGTGAGGAAGCCACTGTCGAATCAGCAGTGTATGGTGACAGCTGGTGGAAGGGCTAAGGCTGACAGTCCCAGTGGACTTGTGTTCCAGAGCTGCCACTTCACTGGGGAGCCTGATGTGTTTGCATTGAGCCCTAAGATCTCATACTTGGGAAGGCCATGGAGGTTGTATTCCAAGGTGGTGATCATGGACTCTGTGATTGATGACATATTCCTACCAGAAGGATACATGGCATGGATGGGAAGTCAGAACAAGGACACGTGTACTTACTATGAGTACAACAACAAGGGACCGGGTGCTGAAATCGCAGGAAGGGTGACATGGCCAGGTGTGAAGACCCTCGCACCATCTGAGGCACAAGATTACTATCCTGGGAAGTTTTATGAATTGGCTAATTCAACTCAACGTGATGCTTGGATCATTGAGTCTGGGGTCCCCTATTCCCTTGGCCCACTCGTTGCTTAA 1764 0.4881 MAAGFDSSHEKKKKVAILGVSSILLVAMVAAVAVGVNSGGEVSNEGNDGSQIARSQKNVQAICENVEFKETCQKSLSKASNGTTDMKELIKAAFNATAEELVDRIHNSTLYHELAKDNMTRQAMDICKEVLGYAVDDIHKSIHIMDKFDINKLSEYAYDLKVWLAGTLSHQQTCLDGFVNTTDAGQTMVKVLNTTLELSNNALDIVNGVSTLLKGLNLTAFTTAYTTTYHSSASATNRKLLGGDGIPSWVGEGQRRLLELESQGNVQADVIVAQDGSGQFKTLTEALNLVPKNNKKPFVIYVKAGIYNEYVSLVKHQTHVTIMGEGPTKTRFTGSKNYVDGLQTYYTSTFSVNAANFMAMHVGFENTAGAEKHQAVALRVTADKAVFYNCQMDGFQDTLYVQSQRQFYRDCIVSGTIDFVFGDAVGVFQNCKFIVRKPLSNQQCMVTAGGRAKADSPSGLVFQSCHFTGEPDVFALSPKISYLGRPWRLYSKVVIMDSVIDDIFLPEGYMAWMGSQNKDTCTYYEYNNKGPGAEIAGRVTWPGVKTLAPSEAQDYYPGKFYELANSTQRDAWIIESGVPYSLGPLVA. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00355 587 FunFam Pectinesterase 4 266 584 - -
Seca12g00355 587 Pfam Plant invertase/pectin methylesterase inhibitor 58 205 IPR006501 GO:0004857
Seca12g00355 587 Pfam Pectinesterase 269 560 IPR000070 GO:0030599|GO:0042545
Seca12g00355 587 Gene3D - 266 585 IPR012334 -
Seca12g00355 587 SMART PMEI_2 54 205 IPR006501 GO:0004857
Seca12g00355 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 209 IPR035513 -
Seca12g00355 587 SUPERFAMILY Pectin lyase-like 267 561 IPR011050 -
Seca12g00355 587 FunFam Pectinesterase 55 210 - -
Seca12g00355 587 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Seca12g00355 587 CDD PMEI-like_3 61 211 - -
Seca12g00355 587 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Seca12g00355 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 207 IPR035513 -
Seca12g00355 587 NCBIfam pectinesterase inhibitor domain 54 208 IPR006501 GO:0004857
Seca12g00355 587 PANTHER PECTINESTERASE 22 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00355 Seca-Chr12 3124970 3127287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00355 11 580 Carbohydrate Esterase AT5G49180 46.794 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00355 K01051 - gmx:100820068 846.654