Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00354 ATGGACAACATGAAGAGCAACGAAAGGCAATACAATTACGCCCTCAGCGGCAAGATAATGTTAGTTTCAATTGTCGTCCTCTTTATCGTTATCATCATAATGATTTGCCTTCACGTCCAAATTCGCTGGTACCTTATACATGCACGCCGCCGCCACACTCGCCGACCGCAGTTCGTCTTCTACGTCGACCCCGCCCTCACTGTCGCCTATCGCGGCCTACCTGCCTCCGTCATCTCCTCCCTCCCTGTTTTCACCTTCTCCCCTAACACCCACCCGGAGCCAGTGGATTGTGCGGTTTGTTTATCGGAGTTCGAATACGGGGAAACGGGTCGGGTCCTGCCCAAATGTAAGCACGCCTTCCACATTGACTGCATCGACATGTGGTTCCAGTCTCACTCCACCTGCCCCCTTTGCAGGGCATCCGTGGAGCCTCTACCCGCAGGAGAAACCCGACCCGGAGTGACTGTAACGGAACCGGGTTCGAGTTCCGGGTTGCGCGTGGAGAGCCAGTACGGTGGGGAAGAGTTGAACCGGTCAGGACAGGTGGTTTCTTCTTCTTCGTTGTGCCAGACTATGAAGCCGTCGCCGCTGGTTGGTGTGACGGTTGAGATTCCTAGAAGAAACGACGGGGGCGAGGCGGGTTGTGAGACGCCGTCGTCGTTTCGGTCGCCGATGAGTCGCGTGTTGTCGTTGACGAGAATTCTCAGCAGAGAGAGGAAAGGAAGCGTTTCTCCACCGTCGAGTTGTGAAGCAGGGTGCAGCTCCAAGAACGAGTTAGACGCAGAACGAGGCGGAAGAGATGAGACTCAGTGA 813 0.556 MDNMKSNERQYNYALSGKIMLVSIVVLFIVIIIMICLHVQIRWYLIHARRRHTRRPQFVFYVDPALTVAYRGLPASVISSLPVFTFSPNTHPEPVDCAVCLSEFEYGETGRVLPKCKHAFHIDCIDMWFQSHSTCPLCRASVEPLPAGETRPGVTVTEPGSSSGLRVESQYGGEELNRSGQVVSSSSLCQTMKPSPLVGVTVEIPRRNDGGEAGCETPSSFRSPMSRVLSLTRILSRERKGSVSPPSSCEAGCSSKNELDAERGGRDETQ. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00354 270 FunFam RING-H2 finger protein ATL3 65 144 - -
Seca12g00354 270 CDD RING-H2_EL5-like 96 139 - -
Seca12g00354 270 SUPERFAMILY RING/U-box 77 145 - -
Seca12g00354 270 MobiDBLite consensus disorder prediction 234 270 - -
Seca12g00354 270 MobiDBLite consensus disorder prediction 256 270 - -
Seca12g00354 270 SMART ring_2 97 138 IPR001841 -
Seca12g00354 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 150 - -
Seca12g00354 270 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Seca12g00354 270 Pfam Ring finger domain 96 139 IPR001841 -
Seca12g00354 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00354 Seca-Chr12 3117637 3118449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00354 12 267 Rapid Response to Elicitors AT3G16720 46.416 1.81e-65 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00354 - - lja:Lj6g3v1468220.1 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00354 12 3117637 3118449 Seca12g00354 12 3117637 3118449 ECH
Seca12g00354 12 3117637 3118449 Seca6g04016 6 107817133 107817921 PCT