Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00339 ATGGACGATCCTCAGTACCCAAACAACCCTTCACCCTACCCTCATCAACATGCTCCCATTCCAAAGCAGCACTCCGATAACGATCAAAGCAGCACCGCTGAGTTGCGCGCTCTCGATTGCAACCTCGCTTCCCTTTGCGAACATGTACAAATCGAAGGTTTCAATTCCGGCTCTTTCTCCGATATCGTCGTCAATGCAATGGGCTCCACTTATCACCTCCATCGTCTCATCCTCTCCCGCAGTTCATATTTCAGGAACATGCTTCATGGGCCTTGGAAAGAAGCCGGTGCTCCTATTGTGACTCTGCATGTCGATGATAAGAATGTCAATGATGAGGCAATTGCAATGGCTTTGGCATATCTATATGGGCACCACCCTAAGCTTAATGATAATAATGCATTTCGAGTTCTTGCTGCTGCTTCCTTTCTTGATCTTCAGGATTTATGTGCAATATGTACAGATTTCATTATATCCGAGCTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGATTATGGCATTCATGGGGAGCGTGTTAGAACTGCTTGTTGGGGCTACCTTTGTCAAAGTGGTGGCATGGAATTGAAAGAGGTGCTTCCTAAACTTTCATCTCAAACATTACATGCGTTACTGACCTCTAATGATTTGTGGATACCCAGTGAAGAGAAGCGGTTTGAATTGGCTCTGCACACATTCCTGGAAAAAGGTGCTCACTGCAAGGTCGAAAATCCTGTGCATGGAATTCCTGGTTCTGAGTCTGCAACTGGTATTCATTCTGATTCTGATAACACTAAGGGAAAAAGTGTAACTGATAGCTGCGCTAATAAGAGGTTGGAAACTGGCATAGGGAAAATGAATCTTAAAAGTGATCTAAAGGACCCTAGTACTCCTAATCATCTAGTTGAGCTTGCAGACTCAGTGGTAGACTTCAGCAATGGGGTTTCTGATTCCAATAAACGGGTTCAACAAGCTTCATATGTCAGTTCACCCAACCTGAATCCAAAGTATCCTTGTGACATAGAAGGGCCTTCATTGTCTGATACAGATGGGATGAGAACATCATGTTATGTTGAGGTGCCTCTTGGTGCTGGAGCAACTGGTTTGGGAACTACTGGTGGAGTGGGTATTGAAGGGCCATCTGAGGAAGGACCCTGCTACAATTTGGATAACAATAGTTGGTCAGTTAGGGATCAATCAAGACATTGTTTTTCATCGAATTCTTGTAATGGGCTCACATCCAGTGATTGGGGAAGATATGGAACGCCTCTGTTTTCATGGGGTGGTCATGTTGTTGGCAGAAGACAGCCTAAAGCTCATCCCAGAGGAAACTATGGAGGTCAAGGAGATGAATATGATGCATTTCTTAATATATTTGAAGGGGGTTCCCTTTTATATTGCAATATGTCTTTTGATGCACTTCTGAATGTTAGAAAGCAGCTTGAAGAGTTAGGTTTCCCTTGCAAAGCTGTAAATGATGGTCTGTGGCTGCAGATGCTTCTTAGTCAGAGGGTACAAGAAATCGCTGCGGATACATGCAAAGTTTGTTCCCTTATGAGTATGGCCTGCACTTGCCAGAAGCAGTTTGCATTTTCACATGGAGCTACTACCACTGGATCTTACATGCAAGAACATAATCAGAACAATATGCCCGGGAATGTAGGAAATATATATGTCGCGGAATCTTCTCCAGGAGAAAGAAATGGCCCTTTTAGACCTGTACGAGTACATGTTAGAGGTGCTATTGATGGGCTTGCTGGCATTGGGCGTGGAACTACACTTGTTCCAGCAACTGCTTCGCCTCCTACACGATTTGTCTTTTCTCGTGTACCCTTTGGTGTTGGCAACAGAAACTACCCCCAGTCTGCAGCCAATGATGATTCAGAGACACGTGCTGACCACAATGGAGACCTGTCTGGAGATGGGTTGACAGCTTTGGTTGGGCTAAGCCAGGGAGGGAGTAATGGAACAAATGTACATACAGAGCTAACACAAAGGGGATATGAAATGGGCTTGCAAAGCAGCATGTCTGGAACTACTGCTGGTGGTGCAAGTACTGGTGGCATTCCCATGCAGATGTTAGAGACACCAGAACATACCATTGGTATAGAATGGGAGAATTCGAACAGTTCTTCTATATCATTGGATTTGAAAACACCTTTAAGCCATTTTCCCCCTTTTCGTTTTGGGTAA 2205 0.4454 MDDPQYPNNPSPYPHQHAPIPKQHSDNDQSSTAELRALDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEAGAPIVTLHVDDKNVNDEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHALLTSNDLWIPSEEKRFELALHTFLEKGAHCKVENPVHGIPGSESATGIHSDSDNTKGKSVTDSCANKRLETGIGKMNLKSDLKDPSTPNHLVELADSVVDFSNGVSDSNKRVQQASYVSSPNLNPKYPCDIEGPSLSDTDGMRTSCYVEVPLGAGATGLGTTGGVGIEGPSEEGPCYNLDNNSWSVRDQSRHCFSSNSCNGLTSSDWGRYGTPLFSWGGHVVGRRQPKAHPRGNYGGQGDEYDAFLNIFEGGSLLYCNMSFDALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLMSMACTCQKQFAFSHGATTTGSYMQEHNQNNMPGNVGNIYVAESSPGERNGPFRPVRVHVRGAIDGLAGIGRGTTLVPATASPPTRFVFSRVPFGVGNRNYPQSAANDDSETRADHNGDLSGDGLTALVGLSQGGSNGTNVHTELTQRGYEMGLQSSMSGTTAGGASTGGIPMQMLETPEHTIGIEWENSNSSSISLDLKTPLSHFPPFRFG. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00339 734 MobiDBLite consensus disorder prediction 1 31 - -
Seca12g00339 734 MobiDBLite consensus disorder prediction 1 17 - -
Seca12g00339 734 Pfam BTB/POZ domain 54 158 IPR000210 GO:0005515
Seca12g00339 734 SMART BTB_4 60 160 IPR000210 GO:0005515
Seca12g00339 734 ProSiteProfiles BTB domain profile. 60 130 IPR000210 GO:0005515
Seca12g00339 734 MobiDBLite consensus disorder prediction 259 275 - -
Seca12g00339 734 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 13 734 - -
Seca12g00339 734 Gene3D Potassium Channel Kv1.1; Chain A 27 193 IPR011333 -
Seca12g00339 734 MobiDBLite consensus disorder prediction 255 275 - -
Seca12g00339 734 SUPERFAMILY POZ domain 54 158 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00339 Seca-Chr12 2996068 3002128 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca12g00339 BTB 3.9e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00339 - - gmx:100806711 1263.44