Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00332 ATGCAGAACGAGGAGGGAAAACTCACTGAGCTATATGTTCCAAGGAAATGCTCTGCTACTAACAGACTGATAACTGCAAAGGACCATGCCTCAGTTCAAATTAACATTGGCCATTTGGATGAGAGTGGTGCCTACACTGGTCACTTCTCCACATTTGCTCTATGCGGTTATGTCCGAGCACAGGGAGATGCTGACAGTGCACTAGATCGCTTGTGGCAAAAGAAGAAGGCTGAAGCTAAGCAACATTAG 249 0.4618 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQINIGHLDESGAYTGHFSTFALCGYVRAQGDADSALDRLWQKKKAEAKQH. 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00332 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Seca12g00332 82 Gene3D - 1 81 IPR038579 -
Seca12g00332 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Seca12g00332 82 FunFam 40S ribosomal protein S21 1 81 - -
Seca12g00332 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Seca12g00332 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00332 Seca-Chr12 2949217 2950820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00332 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 81.707 1.01e-50 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00332 K02971 - qsu:111988471 154.836