Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00329 ATGCTCAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTATAAATGTAATAGTTATAAAGGCATTCCTTGTGAGATCACCAATGGCTACAAAATTCTTCCTGATGTTCGTAGAACAAGCAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCAAATGCTACACTAGCCAACACAAACATCTGCAACGGCAAGATAGGAGGGGAAATTCTTCCAAGTTGGGACTCTCCTAATTCATTTCGTAAAGTACCCTCTTCTCCAAGTCTTTCAAAGTTGGACAGACTATCATCTTCCCTCCCAAATAGTTTGTCTTACCTAAGCTGCAGTCCTTCCACTCCAAGTGATATCCTTGAATATGACTCTTGCACATCAAAATCCATGAGTGATCTTTCCAGAAGTGAAGGCTTTCTTAATGCTGAAGAAGTTCAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAACGGGTGGCTCTTTTGTGCAATTTATGATGGCTTTAATGGGAGAGACGCGGCTGACTTTCTGGCTGGTACCCTGTATGACACCATCATATCTTACTTAGATAAGTTAATTTGGGAATTGGATCCGGGTTTGATCAAAGCTTCTAACAGCGTGGGTTTGGGTGAAGCCCTTCAATATAAGTTGGATTATAGTCTTATTCATCATGAGGATCAATCTCTGTCAAGATTCAAGGGGAGAAATGATTGTAATCATGGTTGTTTTGCAAAGGGTAGTCCATCTACTAAGTCAGAAGCATCATGTGACTCATTTTCGAATGGGGTACTTGATAGCCTCCAATGTGCTCTTATTCAGGCTGAGAATGATTTCCTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGGATCTTGTGTTTTACTTTTGCTTCTTCACGGTAATGATCTGTATACACTTAATCTAGGTGATAGCAGAGCAGTATTAGCAACATGCAGTACAGGTGACAGACTGAATAAGAGTGAGAGGCTCCAGGCTATTCAGCTTACAGATAGTCATACAGTTGAAAATGAAGCTGAAAGAGCTAGACTTATGGCTGATCATCCTGATGATTCCAAGGTCATTATAGCAGGAAAAGTGAAAGGTAAACTGAAGGTTACTCGTGCATTTGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCTTTGATGGGAATCCTTCGAGTTCATAATCTTACAAGCCCACCATATATTTCCACTCAACCATCACTGAATGTCCATAAAATCTCAAGTGCTGATCAATTTGTTATAGTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCTTGTAGAGTCTTATATCTTGAGCAATCCTTTGGGTGATCCAGCAAAGTTTCTCATAGAGCAGCTTGTGGCTAGAGCAGCTGATTCTGCAGGTTTCAGTATGGAAGAGTTGATGAATGTTCCAGCTGGGAGGAGAAGAAAGTACCATGATGACGTGACCGTAATTGTGATCATGCTTGGGATGAATCAGAGGACTTCAAAGGCTTCAACCTGCATCTAG 1575 0.4095 MLSPEGELKISFGYKCNSYKGIPCEITNGYKILPDVRRTSSFSCLSGAALSANATLANTNICNGKIGGEILPSWDSPNSFRKVPSSPSLSKLDRLSSSLPNSLSYLSCSPSTPSDILEYDSCTSKSMSDLSRSEGFLNAEEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYLDKLIWELDPGLIKASNSVGLGEALQYKLDYSLIHHEDQSLSRFKGRNDCNHGCFAKGSPSTKSEASCDSFSNGVLDSLQCALIQAENDFLYMVEQEMEERPDLVSIGSCVLLLLLHGNDLYTLNLGDSRAVLATCSTGDRLNKSERLQAIQLTDSHTVENEAERARLMADHPDDSKVIIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVHNLTSPPYISTQPSLNVHKISSADQFVIVGSDGLFDFFSNDEAVKLVESYILSNPLGDPAKFLIEQLVARAADSAGFSMEELMNVPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00329 524 SUPERFAMILY PP2C-like 150 512 IPR036457 -
Seca12g00329 524 Gene3D - 112 520 IPR036457 -
Seca12g00329 524 FunFam Probable protein phosphatase 2C 40 117 520 - -
Seca12g00329 524 Pfam Protein phosphatase 2C 281 475 IPR001932 -
Seca12g00329 524 ProSiteProfiles PPM-type phosphatase domain profile. 136 511 IPR001932 -
Seca12g00329 524 SMART PP2C_4 123 509 IPR001932 -
Seca12g00329 524 PANTHER PROTEIN PHOSPHATASE 2C 141 509 IPR015655 GO:0004722|GO:0006470
Seca12g00329 524 CDD PP2Cc 149 509 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00329 Seca-Chr12 2937663 2940948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00329 4 524 PP2C-type Phosphatase Gene Family AT3G16560 62.239 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00329 - - gmx:100808304 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00329 12 2937663 2940948 Seca6g03977 6 107466331 107468551 PCT