Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00314 ATGTTTCACTGTTATCGCCGAAGAGGTCTTCTCTACCTCAACACTATCTCCCAACTATCTCTATCATCAACCCCAAAATGTGACCTTTTTCTGAAACCCCACCCGTCGTCGATTTCTCTCAGCTTCCTCTCAACTACTTCACATCAACAATCTTTCATCATATCCTACCTCACAAACAATTGTGGTTTATCACCACAAGCTGCTCTAAAAGCATCCAAGCGACTTCGTTTCGACACATCCCAGAAGCCAGATTCTGTTATCGCTTTCTTCAGAGACCATGGCTTCTCTCTCACCCAGATACACAGCATCATTGGAAGGACACAGGAGCTGCTTGTATGCGATCCCATCAAAAGGGTTTTGCCCAAGTTTGAATTTTTAGCCTCCAAAGGTGCTTCTTCCTCTGATATTGTTCTCACGGTGATTAAGAGCCCACGTTTTCTGCGAGTAAGCCTTGAGCACATTATCTCAGCGTTTGAATTGGTAAGGAGATTCTTTCCATCTGATAGAAAAGCCATTGTTTGTGTAATTGCTTGTCCCAGTTCCTTTGGTGATCCTCGCGTGGAATCAAATGTGAACTTGTTGCTTGATTTTGGAGTCACTCCCTCAAACATTTACCATTTGCTTCGTACTAGGCCCTCTGTACTCTCTTCCTCTGACTTAGGCAGGGTCATAGAGGAAGTAAAGGGATTGGGATTTGATCCTTCCAAATTAAATTTTAGCGTAGCATTACTAGCCAAAAGGGCTATAACCAAATCCCAGTGGGATGCCAAAGTTGATGCCTTTAAGACCTGGGGCTGGTCCGAAGATGCAATTTTATATGCATTTAGGAGGCAGCCCAACTTTATGCTACGGTCTACGGACAAGCTCAATGCAGTGATGAGATTTTGGGTTGGCCAGCTTGGTTGGGATCCTTCAGTGCTTCAAGCATCACCAGTACTTTTTGGATTTAGTTTGGAGAAAAGGCTTATTCCAAGGGCTTCAGTTGTTCAGTATCTTCTCTCCAGAGGTTTGATGAAGAAGGGTGCTAGCTTAATTACACCATTTAGTTTGTCTGACAAGCTGTTCCTGCAAAGGTTTGTGAAATATTTTGAGGATATCTTCCAACCATCTCTGTCACCAACCCCAAAATGTTACCTTTTTCTGAAACCCTACTTATACCCATCGTCAATCTCTCTCAACTGCTTCTCAACGACTTCACATCAACAACCTTTCATCATATCCTACCTCACAAACAATTGTGGTTTCTCACCACAAGCTGCTCTAAAAGCATCCAAGAATCTTCGTTTCGACACCTCCCAGAAGCCCGATTCTGTTATCGCCTTCTTCAGAGACCATGGTTTCTCTGTCCCCCAGATACACAGCATCATTGGCAGGATTCCGAATTTGCTTGTATGCAACCCCATCAAAAGGGTTTTGCCCAAGTTTGAATTTTTAGCCTCCGGAGGTGCTTCTCCCTTTGATATTGTTACCATGGTGACTAGGAGCCCGCGTTTCCTGCGTTCAAGCCTTGAGAATCACATAATCCCTGCATTTGAATCAGTAAGGAGATTCTTTCCATCTGATAGAAGAGCCATTGTTTGTGTAATTGCTTGTCCCAGTTCCATTGCTGATCCTCGCTTGGAACAAAATGTGAACTTGTTGCTTGAATTTGGAGTGTCTCCCTCAAACATTCGCTATCTGCTCTGTACTAGGCCCTCTATACTCTGCTCTGCTAACTTGAGGAAAGTCATGGAGGAAATAAAGGGATTGGGATTTGATCCTTCCAAAATAAATTTTATTGTAGCATTACTGGCCAAAAGGGCTGTAACCAAATCCCAGTGGGATGCCAAAGTTGATACCTTGAAGACCTGGGCTGGTCTGAAGATGAAATTTCACATGCATTTAAGAAGGATCCCCGCTTCATGA 1905 0.4357 MFHCYRRRGLLYLNTISQLSLSSTPKCDLFLKPHPSSISLSFLSTTSHQQSFIISYLTNNCGLSPQAALKASKRLRFDTSQKPDSVIAFFRDHGFSLTQIHSIIGRTQELLVCDPIKRVLPKFEFLASKGASSSDIVLTVIKSPRFLRVSLEHIISAFELVRRFFPSDRKAIVCVIACPSSFGDPRVESNVNLLLDFGVTPSNIYHLLRTRPSVLSSSDLGRVIEEVKGLGFDPSKLNFSVALLAKRAITKSQWDAKVDAFKTWGWSEDAILYAFRRQPNFMLRSTDKLNAVMRFWVGQLGWDPSVLQASPVLFGFSLEKRLIPRASVVQYLLSRGLMKKGASLITPFSLSDKLFLQRFVKYFEDIFQPSLSPTPKCYLFLKPYLYPSSISLNCFSTTSHQQPFIISYLTNNCGFSPQAALKASKNLRFDTSQKPDSVIAFFRDHGFSVPQIHSIIGRIPNLLVCNPIKRVLPKFEFLASGGASPFDIVTMVTRSPRFLRSSLENHIIPAFESVRRFFPSDRRAIVCVIACPSSIADPRLEQNVNLLLEFGVSPSNIRYLLCTRPSILCSANLRKVMEEIKGLGFDPSKINFIVALLAKRAVTKSQWDAKVDTLKTWAGLKMKFHMHLRRIPAS. 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00314 634 Gene3D Transcription termination factor 3, mitochondrial 536 628 IPR038538 -
Seca12g00314 634 Gene3D Transcription termination factor 3, mitochondrial 412 535 IPR038538 -
Seca12g00314 634 Gene3D Transcription termination factor 3, mitochondrial 181 368 IPR038538 -
Seca12g00314 634 Pfam mTERF 254 355 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 Pfam mTERF 440 594 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 Pfam mTERF 88 233 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 FunFam Mitochondrial transcription termination factor-like 150 367 - -
Seca12g00314 634 SMART mt_12 489 553 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 SMART mt_12 172 200 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 SMART mt_12 558 586 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 SMART mt_12 205 233 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 SMART mt_12 101 132 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 SMART mt_12 453 484 IPR003690 GO:0003690|GO:0006355
Seca12g00314 634 PANTHER CGI-12 PROTEIN-RELATED 50 361 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00314 Seca-Chr12 2825542 2829197 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca12g00314 mTERF 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00314 K15032 - gmx:102666739 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00314 12 2825542 2829197 Seca12g00314 12 2825542 2829197 ECH
Seca12g00314 12 2825542 2829197 Seca6g03965 6 107371826 107388615 PCT