Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00312 ATGGAGGATAATGTTGGAAGCAGTTCCTGTAATGACAATATTGGCATCAAGGAACAGGACCGGTTGTTGCCAATAGCTAATGTTGGCAGAATCATGAAGCAGATTTTACCTCAGAATGCAAAAATCTCGAAGGAATCGAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTCATAAGCTTTGTAACAAGTGAGGCATCAGAGAAGTGCAGGAAGGAAAGGAGGAAGACTGTGAATGGAGATGACATCTGCTGGGCCTTGGGGACTCTTGGTTTTGATGAGTATGCAGAGCCAATGAGAAGGTATTTGCATAGATACAGAGAACTAGAGGTAGATAATAGAACTAATCAAGAAAGAGGAAATAGCCCTGAAGAGAAAGATTGGCCCCCCAGAGGAACTAGACAGTAA 405 0.4272 MEDNVGSSSCNDNIGIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDEYAEPMRRYLHRYRELEVDNRTNQERGNSPEEKDWPPRGTRQ. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00312 134 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca12g00312 134 FunFam Nuclear transcription factor Y subunit B-3 11 132 - -
Seca12g00312 134 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca12g00312 134 MobiDBLite consensus disorder prediction 106 134 - -
Seca12g00312 134 Gene3D Histone, subunit A 11 129 IPR009072 GO:0046982
Seca12g00312 134 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Seca12g00312 134 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Seca12g00312 134 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Seca12g00312 134 SUPERFAMILY Histone-fold 19 120 IPR009072 GO:0046982
Seca12g00312 134 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00312 Seca-Chr12 2816342 2816746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00312 16 119 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.077 7.92e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca12g00312 CBFD_NFYB_HMF 4.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00312 K08065 - gmx:100794513 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00312 12 2816342 2816746 Seca6g03963 6 107354067 107354510 PCT