Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00302 ATGGCCCCTTCTAGGAAATCTAGAAGTGTAAATAAGAAGTTTTCTAATATTCATGAGGCTGCATCTAGTAAAGATAAGGATGCAGCAAATGCTAGCAAGAATAGACAGAAGGCAAGTGCTGGTATTCAGAAGAAGAGAAAATTGACTGACATGTTAGGGCCACAATGGAGTAAGGAAGAGCTTGAGCAATTCTATGAAGCTTACCGTAAATTTGGGAAAGATTGGAAGAAGGTTGCTCTCGCAGTACGTAGTAGATCTATGGAAATGGTAGAAGCCCTGTACACTGTGAACAGGGCATACTTATCTCTTCCAGAAGGCACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTGTACTGGGAGGAAGTGACAGTGGAAAAGAGAGCAATGAAGATGCAGAAATATCTAAAAAGTCTAAAAAACGTTTGCGGGGAAATCATCTAAATGACAATAAAGCATTAGATGGACACATTTCAGATCATTCTCAGTCTCATTCTGTTGCATCAGGTGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATTAAGCCTCATGCTGTTCGAAAAAGAACTCCCCGTGTCCCTATTTCATATTCTATTGGTAGAGATAACGGGGAGAAGTTTTTTTCACCTGCTAGGCAGGGCTCCAAACAAATGGTTGATACTAATGATGTTGCTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCTCTTCTAAAATTTCTGGATCACCAAACAAGAAAAATATGCCATCACCTGATCTGAAAAATGAGAAGGTACGTGTTAAATCAGAAAAGGCAGGGGCCAAGTTTTGCAGTTCTGACATGGACGGGGGTAGTTCTGAGTTGAGTTTAGGAAGCACAGAAGGTAATAATGGAGATTATTCTAAAAAAACAATTCATCAGAGAAGTAGAGAAAATGCTGGAAGAGGAAGGAATCAGGAAAAGGGAGTAAAACACTATGGGAAGAATTTAGAACCTGAGGAAAATTCAAACAAGCATTTGAGTGACATAAAGGAGGCCTCCAGTGGGACAGATGATGGTAAAAATATGAGTTTCATCAAATCCAATTTTAACACAGATTTTGCAGCTGCAAAAAATGCAGGGTCCTCTTATAAGGGTTCCAGGAAAAAAAATAAAAAACTACTGTTTGAGAAAGATGAAGGTTCTGCTTTTGATGCCCTGAAAGCTTTGGCTGATCTGTCTTTGATGATGCCAGTAACAAACCCTGACACTGAGTCATCTGCACAGGTCAAGGAAGGAAACCATGATGTTGTTGATGAATCTAAAATGGAAAGACATAATGTATTTCCTAGGATTGATAGCACCACTTCAAGTAAATTGGGCAAGGTTTATTCTGATAATAATGGAGCTGCTGCTACTGAAGCAGAGGGAGCATACCAGCTTAATGCAGGAATCAGAAAAAGAAAACAAAAATCTTCTACCTTAAAAAATGATGAAACACATACTGCTGCTCATTTAAGTGGTTCCCAGAAAATGAAGGTTACTGATGAGGTGAAAAAGTCCATAGTTAAAGGGAAGCGCTCATCAGTTTGTACAGCACACTCAAGACAACTAAAAGTGGTGAAATCCCTGGGAAATATGTCTTCAAATACTAATGACAAAGGGGAAAGAGATGATTCATCATTTTCCCCCATAAAGGTTTCGTCTACTAACCAAGTCAGTCAAGTTAACAGAGGAAGGCCTAGAAGAAAGATGGAAAAACCAAAACCAATCCGACGAGATCTGACGGTGTCTGGAAATATCTTTAGTGGTCATAATAAATATTCTAGTGTGAAGGTCAGTTATTTGTCATTTGTGCTTAAGGGAATGCTTATCAATTGCCTGTCTTCATATCAAATGCGGCGATGGTGCACTTTTGAGTGGTTTTATAGTGCTATTGATTACCCATGGTTTTCAAAGAAAGAGTTTGTAGAGTACTTAGACCATGTTGGATTGGGTCATGTTCCGAGATTGACTCGTATTGAGTGGGGAGTTATTAGAAGTTCTCTTGGTAGACCACGGAGATTTTCAGAGCAATTTTTGATAGAAGAAAAAAATAAACTTAATCAATACCGGGAATCTGTCAGATCACATTATGCTGAAGTTCTTGCTGGTACCAAGGAAGGCCTTCCTACTGATTTGGCCCAACCATTAATTGTTGGGCAGCGTGTGATTGCTATTCATCCAAAGACAAGAGAGATTTATGATGGAAGTATACTGACTGTAGACCATTGTAGGTACAGGGTTCAGTTTGACCAGCCTGAACTTGGGGTTGAATTTGTCACGGATATTGACTGCATGCCTTTGTATCCATCTGAAAATATGCCCACGTCTCTGATAAGAAACAATATCACTCCTGAGAACCTTAATGATCCGATGCTTAATGGGAAACTGAGACAGAGAAAGATTGCTGAGCACACGATATTGTCCCCTAGTGAGAATTTAGATAACCTTAAAGGTCTTTATATATCCCCTACTATGCATGGAAGCAGAACTTTATCAAAACAGGGATTTTCTTCAGGCTGCAAATCGCAAGCAAAAGTTGTGTTCAGTGAGTTTGGTAGTGCCCAACTAGCATCAAGTTCTCAACCTTCCCTTCTTGAACATGTCCACTCAAAAGATGCTGACATATTAGCAATTTCAGAATTGGCTCGTGCTCTAGACAAGAAGGAACTTGTCTTGTCTGAACTGAAGCACATGAATGATGGGGTATCAGAAAGCCAGAAATATGGGGACAACTCAGTGAAGGATTCAGAACCTTTTAAGAGGAATTATGCTTCAGTAATAAAGCAATTAACTGAAGCAAATGAACAGGTGTCTTCTGCCTTGTTTTTCTTGAGGCAACGCAACACATATCAAACATGCTCCTCAGTTTTGTCAATAAAGCCCATGGCTAATTTTGATGATCCTGGTGGTCAGGCTAGCTCTTCCAATTGTTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACTATGGTTGTTCAAGCTACTCAGGCAATGTCAGTTTTTAGAAAGACAGAAAGTAAGGTTGAAAGAATTGAAGACGCAATAAATTTTATCAATAACCGGCTTTCAGTTGATGACCCTACTGCTTCAGCCACAAATTTTCTGCCCACAGATTCTATTACTTTGGCTACTCAGGATCAATTGACTGCCAGCACATTAAATCCCTTGGAAAGTTGTCTTGCACAAGATGCTGAACTTAACAATTCATCCAACCAAAATGAAATGAAAATTCCCTCAGAACTCATATCCCATTGTCTAGCCACACTGCTCATGATTCAGAAGTGTACCGAAAGACAATTTCCCCCGGCTGATGTTGCTCAGGTTCTAGATTCTGCTGTCGCCAGTTTGCAGCCATTTTGTTCAAAGAATCTTCCAATATATGGTGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATATTAGCACTCGTACCTACCTAG 3528 0.3965 MAPSRKSRSVNKKFSNIHEAASSKDKDAANASKNRQKASAGIQKKRKLTDMLGPQWSKEELEQFYEAYRKFGKDWKKVALAVRSRSMEMVEALYTVNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGKESNEDAEISKKSKKRLRGNHLNDNKALDGHISDHSQSHSVASGDGCLSLLKKRHSGIKPHAVRKRTPRVPISYSIGRDNGEKFFSPARQGSKQMVDTNDVAHKIALALTEASQRGGSSKISGSPNKKNMPSPDLKNEKVRVKSEKAGAKFCSSDMDGGSSELSLGSTEGNNGDYSKKTIHQRSRENAGRGRNQEKGVKHYGKNLEPEENSNKHLSDIKEASSGTDDGKNMSFIKSNFNTDFAAAKNAGSSYKGSRKKNKKLLFEKDEGSAFDALKALADLSLMMPVTNPDTESSAQVKEGNHDVVDESKMERHNVFPRIDSTTSSKLGKVYSDNNGAAATEAEGAYQLNAGIRKRKQKSSTLKNDETHTAAHLSGSQKMKVTDEVKKSIVKGKRSSVCTAHSRQLKVVKSLGNMSSNTNDKGERDDSSFSPIKVSSTNQVSQVNRGRPRRKMEKPKPIRRDLTVSGNIFSGHNKYSSVKVSYLSFVLKGMLINCLSSYQMRRWCTFEWFYSAIDYPWFSKKEFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKNKLNQYRESVRSHYAEVLAGTKEGLPTDLAQPLIVGQRVIAIHPKTREIYDGSILTVDHCRYRVQFDQPELGVEFVTDIDCMPLYPSENMPTSLIRNNITPENLNDPMLNGKLRQRKIAEHTILSPSENLDNLKGLYISPTMHGSRTLSKQGFSSGCKSQAKVVFSEFGSAQLASSSQPSLLEHVHSKDADILAISELARALDKKELVLSELKHMNDGVSESQKYGDNSVKDSEPFKRNYASVIKQLTEANEQVSSALFFLRQRNTYQTCSSVLSIKPMANFDDPGGQASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQATQAMSVFRKTESKVERIEDAINFINNRLSVDDPTASATNFLPTDSITLATQDQLTASTLNPLESCLAQDAELNNSSNQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVASLQPFCSKNLPIYGEIQKCMGIIRNQILALVPT. 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00302 1175 MobiDBLite consensus disorder prediction 540 586 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 1 17 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 560 576 - -
Seca12g00302 1175 SMART DIRP_2 640 741 IPR033471 -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 242 261 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 125 170 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 18 32 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 1 46 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 484 513 - -
Seca12g00302 1175 PANTHER LIN-9 1 1175 IPR010561 GO:0006351|GO:0017053
Seca12g00302 1175 Pfam Myb-like DNA-binding domain 55 90 IPR001005 -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 287 305 - -
Seca12g00302 1175 Gene3D - 2 108 - -
Seca12g00302 1175 CDD SANT 56 90 IPR001005 -
Seca12g00302 1175 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Seca12g00302 1175 SMART sant 52 100 IPR001005 -
Seca12g00302 1175 Pfam DIRP 639 740 IPR033471 -
Seca12g00302 1175 SUPERFAMILY Homeodomain-like 52 98 IPR009057 -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 242 356 - -
Seca12g00302 1175 Coils Coil 1029 1049 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 262 280 - -
Seca12g00302 1175 MobiDBLite consensus disorder prediction 306 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00302 Seca-Chr12 2728399 2746952 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca12g00302 DIRP 8.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00302 - - gmx:100781646 1871.67