Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00301 ATGAATTTGACAAGAACCTTGCCAACCCTAAAACGTTCTCCTCTCGTGATACTGAAACTGCAGCTCTACCTCTACCCATCAACATCATCCTTCTCCCTCGAATTCTACACCACCACCACCACCTCCCATCCACACTCTTCTACGGTGTCCCACCTCGTCAACAATTGTGGCTTTTCCTCAAAAACCGCTTCCAATGCTTCCCGCAAGCTTCGTCTCGACAGCTCCCAAAAGCTCGATGCAGTTATCGACTTCTTCAGAACGAACGGCTTCTCTGACTCTCAAATACGCGATGTCATGAGACGAGAACCATGGCTGCTCTCATGCGACATCGACAACGCAGTGTTGCCCAAGTTTGAATTTTTACGTTCCAAAGGTGCTTCTACCTCTGAAATTGCTCACATGGTAAGTAAGAGTCCTAGATTCCTGGCAAGAAGCTTGGAGAAACATATTATCCCTGCATATGAATTAGTAAAAGGGTTCATCCAATCTGATAAGCGAACCATTGCTTGTTTGGGTCGTTTTTGTTTTAGTTCTAATGGTCATGTTGCACTTAATGTCAAATTATTGCTTGATAATGGAGTGACCCACACAAACATTGCAAGGTTGTTTCGCTCATGGCCTAGTATATTTTGCTCATCTGATTCTGACCTGCTGAGGATTGTTGAGGAATTGAAGGAACTGGGTTTCGATTTTTCAACTTCACCTTTCAGCGTGGCATTGCTTGCCAAGGGATCTGTAAGCGAAACCAGATGGGCTGAGAAAATTGACACCTTTAAGAGGTGGGGGTGGTCTGAACAACAAGTTCTTCAAGCATTTAAGAAGCAGCCTTATTGTATGTTGACGTCCATTGATAAAATCAATGCAGTGATGAGTTTTTGGGTTGATCAGTTAGGTTTGAACTCTTTGGACCTTGTCAAAGCTCCATCATTTTTTCAATGGAGTCTTGAGAAGAGGATTATTCCAAGGGCTTCAGTTGTGCAGTTTCTTGTCTCAAAAGGACTAAGAGAAAAGGATGCAGGCATAACTGCACCATTCAGTCTTTCTGAGAAGTTGTTCCTGGAAAGGTTTGTGAAATGCTTTAAGGAGGATTCTTCTCATCTGTTAAAGTTGTACCATGAAAAAATGAATCTTGCAAATAGCAGGGAGAAGCCTTCACCAAGTGCATAA 1167 0.4293 MNLTRTLPTLKRSPLVILKLQLYLYPSTSSFSLEFYTTTTTSHPHSSTVSHLVNNCGFSSKTASNASRKLRLDSSQKLDAVIDFFRTNGFSDSQIRDVMRREPWLLSCDIDNAVLPKFEFLRSKGASTSEIAHMVSKSPRFLARSLEKHIIPAYELVKGFIQSDKRTIACLGRFCFSSNGHVALNVKLLLDNGVTHTNIARLFRSWPSIFCSSDSDLLRIVEELKELGFDFSTSPFSVALLAKGSVSETRWAEKIDTFKRWGWSEQQVLQAFKKQPYCMLTSIDKINAVMSFWVDQLGLNSLDLVKAPSFFQWSLEKRIIPRASVVQFLVSKGLREKDAGITAPFSLSEKLFLERFVKCFKEDSSHLLKLYHEKMNLANSREKPSPSA. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00301 388 Gene3D Transcription termination factor 3, mitochondrial 172 370 IPR038538 -
Seca12g00301 388 Gene3D Transcription termination factor 3, mitochondrial 45 171 IPR038538 -
Seca12g00301 388 Pfam mTERF 183 352 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 Pfam mTERF 82 230 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 PANTHER CGI-12 PROTEIN-RELATED 45 361 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 SMART mt_12 165 195 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 SMART mt_12 200 230 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 SMART mt_12 132 164 IPR003690 GO:0003690|GO:0006355
Seca12g00301 388 FunFam Mitochondrial transcription termination factor-like 146 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00301 Seca-Chr12 2718409 2719575 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca12g00301 mTERF 4.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00301 K15032 - gmx:102667698 387.497