Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00299 ATGGAACGGTACGGCCGGGCCAGTGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTCGCCGGCGGAGAGACGGGCCTTGAAGAGTCGGTATGGCAACTGGGATTGGTTGGTGGCGAATCGTACCCTCTTCGACCAGATGAGGCTGATTGTATCTACTATCTGAGAACGGGTTTTTGTGGTTATGGCTCACGGTGTCGGTTCAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTGGAGGGGGGTATCCAGAACGAGTAGGACAGCCAGTGTGCCAGTATTATATGAGGACGGGAGCATGCAAATTTGGTGCATCATGCAAATACCACCATCCCAGGCAAGCTGCAGGCACTACTACCCCTGTCTCGCTAAATTATTATGGATATCCATTGCGAATGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACCGGACAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGCGGCCAAATTCTAGCACCATCACCAGTTCCCCCAGTTTCACCTGTGCCTGTGCCGGTACCTTCGCCAATTTATCCAACTGTACAGTCTCCATCTGGTCCTTCATCACAACATTATGGTGTACTTGTTGCAAGGCCACCTCTGCTACCTGGCTCAGTAGTCCAGGGCCCCTATGGGCCTGTAGTATTGTCCCCTGCCATGGTCCCCTTTTCAGGCTGGGGTCCTTATCAGGTTGGTCCAGCATTTCTTGCACCTGCAACAAGTCCTGTGCTTCCTTCTAGTACTCCATCTAATGTTGGCTCAACTCAACTTTATGGGATAAACCAGTTACCTTCATCGGCAACTGCCTATACTGGACCTTACCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGCAGTGGCCAAAAGGAGCACTCATATCCAGAAAGGCCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAAATATCATCATCCACCAGATATGAGTGAACCAAAAGCGAATGTGATCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCTCCAACTTGCACTCATTATACACAGCGTGGAGTTTGTAAGTTTGGTTCTGCATGCAAATTTGACCATCCTATGGGATCCCTGAGTTATAGCCCATCTGCTTCTTCCCTAGCTGATATGCCTGTCGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCATCATCTTCATCATCAGAGTTGCGGCCTGAACTTGCCTCAGGATCTACCAAGGAGTCTGTTTCGTCCAGAATGCCTCCATCAATGAGCACATCTACTGGATCAGTTGGCTTGACCTTGTCAACTGCTGGACCCATTTCTCAATTAAGTACCCAACCATCTGCTCAGAGTTCCAGTTCTTTAGCATCTACCAATGCCACAACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1470 0.4973 MERYGRASEGSQSDPSPEWTVAGGETGLEESVWQLGLVGGESYPLRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARTGGGYPERVGQPVCQYYMRTGACKFGASCKYHHPRQAAGTTTPVSLNYYGYPLRMGEKECSYYVKTGQCKFGATCKFHHPQPAGGQILAPSPVPPVSPVPVPVPSPIYPTVQSPSGPSSQHYGVLVARPPLLPGSVVQGPYGPVVLSPAMVPFSGWGPYQVGPAFLAPATSPVLPSSTPSNVGSTQLYGINQLPSSATAYTGPYQPSGSSIGPSGSGQKEHSYPERPDQPECHYYMKTGECKFGPSCKYHHPPDMSEPKANVILSPVGLPLRPGAPTCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSTKESVSSRMPPSMSTSTGSVGLTLSTAGPISQLSTQPSAQSSSSLASTNATTSSTVSHTSS. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00299 489 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Seca12g00299 489 FunFam CCCH type zinc finger protein 307 392 - -
Seca12g00299 489 SUPERFAMILY CCCH zinc finger 312 337 IPR036855 GO:0046872
Seca12g00299 489 MobiDBLite consensus disorder prediction 411 489 - -
Seca12g00299 489 Gene3D - 298 384 - -
Seca12g00299 489 PANTHER PROTEIN PHOSPHATASE RELATED 38 417 - -
Seca12g00299 489 SUPERFAMILY CCCH zinc finger 359 385 IPR036855 GO:0046872
Seca12g00299 489 FunFam Zinc finger nuclease 2 45 122 - -
Seca12g00299 489 Gene3D - 46 125 - -
Seca12g00299 489 Gene3D - 126 173 - -
Seca12g00299 489 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Seca12g00299 489 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Seca12g00299 489 SUPERFAMILY CCCH zinc finger 137 165 IPR036855 GO:0046872
Seca12g00299 489 MobiDBLite consensus disorder prediction 282 312 - -
Seca12g00299 489 ProSiteProfiles Zinc finger C3H1-type profile. 355 383 IPR000571 GO:0046872
Seca12g00299 489 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Seca12g00299 489 SMART c3hfinal6 309 336 IPR000571 GO:0046872
Seca12g00299 489 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Seca12g00299 489 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Seca12g00299 489 SMART c3hfinal6 355 382 IPR000571 GO:0046872
Seca12g00299 489 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Seca12g00299 489 MobiDBLite consensus disorder prediction 1 23 - -
Seca12g00299 489 MobiDBLite consensus disorder prediction 282 300 - -
Seca12g00299 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 336 IPR000571 GO:0046872
Seca12g00299 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 359 382 IPR000571 GO:0046872
Seca12g00299 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Seca12g00299 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Seca12g00299 489 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Seca12g00299 489 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Seca12g00299 489 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00299 Seca-Chr12 2688273 2693872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00299 1 457 C2H2 Transcription Factor Family AT5G18550 55.720 9.50e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g00299 zf-CCCH 6.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00299 - - gmx:100789405 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00299 12 2688273 2693872 Seca6g04621 6 113686421 113697603 PCT