Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00298 ATGTCAACCTCTAGAACCTCAGATACATCATCCTTCAAAGGATATCATGAACCAAATCAAACCCAAATGTGTCTATCTCTTCTTCAACGTAACACATCTCCTTCTGGTGAGAGGAGAGGCAGAAGGAAGCAAGCAGAACCAGGGAGGTTTCTTGGGGTTAGGAGGCGCCCTTGGGGTCGTTATGCTGCTGAAATTAGAGACCCTACAACCAAAGAAAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCTATGAAAGGAAGCCAAGCAAGAACCAACTTCATTTACTCTGACAATATCAATTTTCACACTCTTCTTTCTCCTATGGATGTTCAATCTCTCATGCCAGCTTCACAATACCTCACTAACACTCAGACCAAACAACCAACCAATCAAAATAGCCTCCCTCATCAGCTTGATACTTCCCACAATGGAAACCCCTCCCCATTGTGTGCTGAAATCAGCACTACATATGGATCAGCTCAGGATGATAATTTCTTCTTTTCCAATGATTCTAACTCAGGCTATCTGGAATGTATAGTTCCTGATAATTGTTTCAGACCTGCTTCCAGTGGCAACAGTTCAAACTCCAGAAAGAGCAATGTGAGTGCTTCAAGTGATCAAAAGGTTAGCTCAGTTAACACAATGTCCATGGAGAGTCATCAGTCCTATGTTGACATGACTTCATTCTCTGAAGAAGTCATAAAAATGCCACCAAGGGCCTCTAACTTTTCAGAGTATTGTTATTCAAGTCAAGGATTCTGGGATGATCATGATCAGCAATCATGGGATTGGAATTCCAGTGAACTTTCAGCTATATTTAACAACCCATTAAGGGTTGAAGATGAATGCATGGATAAGTTGTATCCCACCAATGACAATACAAGCTATGGTCTAATGAATGAGGCTGCTTCTTCAACAACATGTTCTCCTTCAGTTCCACCCTTTGGGGAAGTAGACTTGGGATACCCACTTTTCTGA 1014 0.4231 MSTSRTSDTSSFKGYHEPNQTQMCLSLLQRNTSPSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSDNINFHTLLSPMDVQSLMPASQYLTNTQTKQPTNQNSLPHQLDTSHNGNPSPLCAEISTTYGSAQDDNFFFSNDSNSGYLECIVPDNCFRPASSGNSSNSRKSNVSASSDQKVSSVNTMSMESHQSYVDMTSFSEEVIKMPPRASNFSEYCYSSQGFWDDHDQQSWDWNSSELSAIFNNPLRVEDECMDKLYPTNDNTSYGLMNEAASSTTCSPSVPPFGEVDLGYPLF. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00298 337 FunFam Ethylene-responsive transcription factor 2 49 107 - -
Seca12g00298 337 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g00298 337 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Seca12g00298 337 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Seca12g00298 337 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Seca12g00298 337 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Seca12g00298 337 Pfam AP2 domain 52 98 IPR001471 GO:0003700|GO:0006355
Seca12g00298 337 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Seca12g00298 337 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Seca12g00298 337 MobiDBLite consensus disorder prediction 201 226 - -
Seca12g00298 337 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Seca12g00298 337 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 234 - -
Seca12g00298 337 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00298 Seca-Chr12 2684287 2685300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00298 1 199 AP2-EREBP Transcription Factor Family AT5G18560 49.799 4.30e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g00298 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00298 - - gmx:100812047 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00298 12 2684287 2685300 Seca6g04620 6 113681987 113682970 PCT