Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00286 ATGGAAGGCTACAGTGAGGACTCTGCTATGCCAATGCCACCACTCTCTCAAATCCCACCTCTTTCTTCTTCTTCTCTTGACCCTTCAACCATTGCTGAAATGGGTAACAAACCCTCCAGAAAGCGTTGTCAGAAATTGGGTGCTCCCAATGCAGAGAGCCTTAAGATGGAACGTGATCGAAGGTTGAAGATGGCTCAAATGTTCACTCAGCTTCGGAACTCTGTCCCTGGTGTCTTTCCTCAGGCTACTAGGGAAGTGATTGTAAACGAAACAATTCGTTACATTAAGGACCTTGAGAAGAAGAAGCAAAAGTTGGAGGAGCTCAAGGAATCAATGAAATCAAAAGAAGAGAGGTTGATGCTTCCTTGTGCTAACATGAATTGCTCCATCACGGTTACTGTGTCTAGCAATGTTGCCTTCTTTGGAATTCAATCGGTGGCTCAACCTGGTTTAATCACAGTAATTTTGAAGGTGTTCTCTAAGCACCAAGCTGAGATTTTGGCTGCAAATGTCTCAGTTAATCATGGCAAGTTGATATTAGCAATCACAGCGTTAGTGCAAAATGGTGATGGAAATAGTACCATTGAAAAGATCAAAAGAGAAATTACTAGTTTGTAG 618 0.4239 MEGYSEDSAMPMPPLSQIPPLSSSSLDPSTIAEMGNKPSRKRCQKLGAPNAESLKMERDRRLKMAQMFTQLRNSVPGVFPQATREVIVNETIRYIKDLEKKKQKLEELKESMKSKEERLMLPCANMNCSITVTVSSNVAFFGIQSVAQPGLITVILKVFSKHQAEILAANVSVNHGKLILAITALVQNGDGNSTIEKIKREITSL. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00286 205 ProSiteProfiles ACT domain profile. 140 205 IPR002912 -
Seca12g00286 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Seca12g00286 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 120 IPR036638 GO:0046983
Seca12g00286 205 Pfam Helix-loop-helix DNA-binding domain 55 99 IPR011598 GO:0046983
Seca12g00286 205 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 56 116 IPR044278 GO:0003700|GO:0006355|GO:0009960
Seca12g00286 205 Gene3D - 49 128 IPR036638 GO:0046983
Seca12g00286 205 Coils Coil 88 118 - -
Seca12g00286 205 SMART finulus 54 104 IPR011598 GO:0046983
Seca12g00286 205 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00286 Seca-Chr12 2590837 2591970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00286 20 106 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.737 5.34e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g00286 HLH 0.00014 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00286 - - gmx:102670256 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00286 12 2590837 2591970 Seca12g00286 12 2590837 2591970 ECH