Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00285 ATGCAGGAAAGAGAACAAGCACTGAGGTCGTTCAAGAGTGGAAACACACCAATTCTAGTGGCAACGAAAGTTGCAGCACGTGGTCTCGATATTCCAAGGGTAGCACATGTGGTAAATTTTGATCTCCCCAATGACATTGATGATTATGTGCACAGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGAAGCAGCCTTCTTCAATGACAGTAATTTGTCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGCTATCATCAAGCCTCAGTATGTTGACCACATTCCAAAAGCGGTACAAGGAAATGTGGGGCAGGTGCTAGACCAGAAAAATGAGAGATATGAAGCCGAGCTTTGTCATGATCTTGAGCTTAATCAGGTTATAGATCGTAATGTAGGTGACCTTTCGGGTGGTGAGCTTCAAAGGTTTGCTATTGCCGTTGTTGCCATCCAGAATGCTGAGATATACATGTTTGATGAACCTTCTAGCTATCTTGATGTGAAACAGAGGCTGAAAGCTGCCCAAGTTACTCGATCATTGCTTAGGCCTAATAGCTATGTAATTGTTGTAGAGCATGATCTTAGTGTCTTGGACTACTTATCAGACTTTATTTGTTGTTTATATGGCAAACCTGGTGCATACGGAGTGGTAACTAGGCTTCCTTGA 684 0.4298 MQEREQALRSFKSGNTPILVATKVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLEAAFFNDSNLSLAKPLADLMQEANQEAIIKPQYVDHIPKAVQGNVGQVLDQKNERYEAELCHDLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVTRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTRLP. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00285 227 CDD SF2_C_DEAD 2 64 - -
Seca12g00285 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 96 IPR027417 -
Seca12g00285 227 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 84 224 IPR013283 -
Seca12g00285 227 Pfam ABC transporter 103 168 IPR003439 GO:0005524
Seca12g00285 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 215 IPR027417 -
Seca12g00285 227 Gene3D - 61 226 IPR027417 -
Seca12g00285 227 Pfam Helicase conserved C-terminal domain 2 60 IPR001650 -
Seca12g00285 227 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 99 IPR001650 -
Seca12g00285 227 SMART helicmild6 1 60 IPR001650 -
Seca12g00285 227 ProSitePatterns ABC transporters family signature. 141 155 IPR017871 GO:0005524|GO:0016887
Seca12g00285 227 Gene3D - 1 60 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00285 Seca-Chr12 2583325 2584383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00285 2 80 Eukaryotic Initiation Factors Gene Family AT3G19760 37.975 1.73e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00285 K06174 - rcu:8261457 259.225