Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00280 ATGGGGTGTGTGTTTGGGAAAGAGGCTTCAGAGAGAAGGAAGGAAGAGAGGGAAGAGGAAGTGGAAGTTTCAAAGGCAGAGGAGGTTCAAAATGGTGATAATAATGCAAAGGAGGGTGAAGAGAAGGAGAAGAGCAAAAGGCCTAAGAGGGAAAAGAGAAGATCTTCAAAGCCAAATCCAAGGTTGAGCAATCCACCAAACCATGTGCATGGTGAGCAAGTGGCTGCAGGGTGGCCCTCTTGGCTCTCTAAGGTTGCTGGGGAAGCCATAAATGGATTGACCCCTAGAAGGGCAGACACTTTTGAGAAGCTTGATAAGATTGGACAAGGTACATATAGCAATGTTTACAAGGCTAAGGATACTTTAACTGGAAAAATTGTTGCCCTAAAGAAGGTCCGTTTTGACAACTTAGAACCTGAGAGTGTGAAATTCATGGCCAGAGAAATTCTGATTCTGCGGCGTTTGGATCATCCCAATGTTGTCAAATTAGAAGGTTTAGTGACTTCTAGAATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAGCATGATTTAGCTGGACTTGCTACAAGCCCAACAATTAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTACTTTCTGGACTGGAACACTGTCACAACCGCCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTGTTGACAATGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAGCACCCTATGACTAGTAGGGTAGTTACTTTGTGGTATCGAGCTCCAGAGCTTCTTCTTGGATCCACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGTTGTATTCTTGCTGAATTATTGGCTGGAAAGCCTATTATGCCTGGTCGAACAGAGGTGGAGCAACTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCAAAGTTGCCACACGCTACCATTTTTAAGCCCCAACAATCATACAAGCGGTGCATAGTAGAGACATTCAAAGATTTCCCACCATCATCCCTGCCACTAATTGAGACCCTTCTTGCAATCGATCCAGCTGAACGTCAAACTGCCACTGCTGCACTGCATAGTGAATTCTTTACAACACAACCTTATGCTTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAAGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGACTGAGAGCTGCTGGCAAAGCTAATGCTAATGGTGTCAAGAAATCTCGTCCACGTGAGCGAGGTGGGAGGAGAATTCCAGTTCCGGATGTCAATGCTGAGCTCCAAGCAAATATTGATAGATGGAGACTGGTAACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAACTCTAGGCTATCCTTTGGGTTCTTCACATCACATGGATCCACTTTTTGATCCTCCTGATGTTCCATTTAGTTCAATAAACCTCTCATATCCTAAAACAAATATCCAGACCTGGTCTGGCCCATTGGTGGAACCTACTGTGAGTGCACTGAGGAGAAAGAAGAACAAGGTAGTTGATGGGCACATACAACCCAAGTCATCAAACAAAGAAGGACTCAAATAG 1662 0.4374 MGCVFGKEASERRKEEREEEVEVSKAEEVQNGDNNAKEGEEKEKSKRPKREKRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLVDNEGILRIADFGLASFFDPNHKHPMTSRVVTLWYRAPELLLGSTDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIVETFKDFPPSSLPLIETLLAIDPAERQTATAALHSEFFTTQPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAAGKANANGVKKSRPRERGGRRIPVPDVNAELQANIDRWRLVTHANAKSKSEKFPPPHQDGTLGYPLGSSHHMDPLFDPPDVPFSSINLSYPKTNIQTWSGPLVEPTVSALRRKKNKVVDGHIQPKSSNKEGLK. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00280 553 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Seca12g00280 553 Coils Coil 7 27 - -
Seca12g00280 553 Gene3D Phosphorylase Kinase; domain 1 89 183 - -
Seca12g00280 553 MobiDBLite consensus disorder prediction 7 47 - -
Seca12g00280 553 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Seca12g00280 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Seca12g00280 553 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Seca12g00280 553 SUPERFAMILY Protein kinase-like (PK-like) 96 390 IPR011009 -
Seca12g00280 553 MobiDBLite consensus disorder prediction 1 72 - -
Seca12g00280 553 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00280 553 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00280 553 MobiDBLite consensus disorder prediction 422 442 - -
Seca12g00280 553 MobiDBLite consensus disorder prediction 530 553 - -
Seca12g00280 553 PANTHER CELL DIVISION PROTEIN KINASE 99 389 - -
Seca12g00280 553 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00280 553 CDD STKc_CDK9_like 101 385 - -
Seca12g00280 553 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00280 Seca-Chr12 2552429 2556374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00280 96 423 Core Cell Cycle Gene Families AT5G10270 51.453 9.75e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca12g00280 Pkinase 1.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00280 K08819 - gmx:100791757 948.732