Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00279 ATGGCTTTATACGAGAAACTAACGACTGTGATGACCTCTGATCACGCATCAGTGGTGTCAATGAACCTGTTCGTTGCTCTTCTCTGCACTTGCATCATCATTGGTCATTTGTTGGAGGAGAATCGCTGGATTAATGAATCCATCACTGCCCTTCTCATTGGTCTCTGTACTGGGGTTTTCATATTGCTTACCACTGGTGGAAAAAGCTCTCATATATTGCTTTTCAGTGAAGATCTTTTCTTTATTTACCTTCTTCCTCCCATCATTTTCAATGCCGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTTATGACTATCATGCTCTTTGGTGCAATTGGTACATTGATATCATTCTGCATCATATCACTAGGTGCCATCCACTTTTTCCAGATACTAGATATTGGTTCCCTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACATTGCAGGTTCTTAATCAGGATGAGACACCTTTACTATACAGCCTGGTGTTTGGGGAAGGGGTAGTAAATGATGCTACCTCCGTAGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATCGACTTAATCACTGCTTTGCAGTTAGTAGGAAATTTTTTATATTTATTCATCGCAAGCACTGTGCTGGGAATCTTAGCTGGATTGCTTAGCGCATTCATTATTAAAAAGCTCTATTTTGGCAAGTTGATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGATACTCATGGCTTACCTTTCATACATGCTAGCTGAACTATTTTCATTAAGTGCCATTCTTACTGTGTTCTTCAGTGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACTGAAAGTTCAAGAGTGACAACCAAGCATGCTTTTGCCACTTTGTCATTCATTGCTGAGATCTTTATCTTCCTTTATGTTGGGATGGATGCACTAGATATAGAGAAGTGGCGATTTGTAAGTCAAAGCCCAAGAAAATCGATTGGGGTCAGTTCGTTGTTGTTGGCACTTATCCTAGTAGGAAGAGCTGCATTTGTTTTCCCTCTGTCATTCTTATCCAACTTGTCCAAGAAGTCTCAATCTGAGAAAATTGAGTTCAAGCAACAAGTATGTATTTTGCTGCACTTTCCATTTCAGGGTCTGATACTGAATCAATTGCTGTATTACATTCCTCTGATGATTTTGTTTCTTAGGTAA 1233 0.3958 MALYEKLTTVMTSDHASVVSMNLFVALLCTCIIIGHLLEENRWINESITALLIGLCTGVFILLTTGGKSSHILLFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFCIISLGAIHFFQILDIGSLKIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDLITALQLVGNFLYLFIASTVLGILAGLLSAFIIKKLYFGKLIRHSTDREVALMILMAYLSYMLAELFSLSAILTVFFSGIVMSHYTWHNVTESSRVTTKHAFATLSFIAEIFIFLYVGMDALDIEKWRFVSQSPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLSKKSQSEKIEFKQQVCILLHFPFQGLILNQLLYYIPLMILFLR. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00279 410 PRINTS Na+/H+ exchanger signature 93 107 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00279 410 PRINTS Na+/H+ exchanger signature 108 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00279 410 PRINTS Na+/H+ exchanger signature 148 158 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00279 410 PRINTS Na+/H+ exchanger signature 79 90 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Seca12g00279 410 Gene3D - 140 192 - -
Seca12g00279 410 Pfam Sodium/hydrogen exchanger family 25 379 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca12g00279 410 PANTHER SODIUM/HYDROGEN EXCHANGER 12 384 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00279 Seca-Chr12 2540426 2544363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00279 2 400 Antiporters AT3G05030 76.441 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00279 - - gmx:100791224 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00279 12 2540426 2544363 Seca12g00279 12 2540426 2544363 ECH