Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00270 ATGGGAAGGTATCGAAGCCGAAGCCGAAGCTACAGCCCTCGACGGCGTAGCAGAACCCCACCGCGCGGACGCAAGCGCTACGATGATGATCGCGGTGACAGCAGGTCACACAGAGACCGACGCTCACCTCTTCCTTCTGGCTTGCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGACCCCATTCGAGCGCTATGGTCCTGTGAAGGATGTATATCTTCCTAGAAACTACTACACTGGTGAGCCTCGGGGCTTTGGATTTGTGAAGTATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACAGCTTAATCATACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACTCCTCAAGAGATGCGCCTTAGTTCTCGTTCAAGTGGCCGACAAGGAGGTGGTAGAAGGAGGGCTAGGACAAGGTCCCCAAGACGCCGATATCGATCCTACTCTAGGTCTCCATCACCAGCCAGGGATGATTCAAGATAA 522 0.5096 MGRYRSRSRSYSPRRRSRTPPRGRKRYDDDRGDSRSHRDRRSPLPSGLLVRNLPLDARPEDLRTPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRLSSRSSGRQGGGRRRARTRSPRRRYRSYSRSPSPARDDSR. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00270 173 MobiDBLite consensus disorder prediction 1 49 - -
Seca12g00270 173 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 166 - -
Seca12g00270 173 MobiDBLite consensus disorder prediction 22 44 - -
Seca12g00270 173 SMART rrm1_1 47 120 IPR000504 GO:0003723
Seca12g00270 173 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 138 - -
Seca12g00270 173 SMART rrm2_1 47 120 IPR003954 GO:0003676
Seca12g00270 173 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g00270 173 Gene3D - 2 134 IPR012677 -
Seca12g00270 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Seca12g00270 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Seca12g00270 173 MobiDBLite consensus disorder prediction 124 173 - -
Seca12g00270 173 SUPERFAMILY RNA-binding domain, RBD 48 152 IPR035979 GO:0003676
Seca12g00270 173 MobiDBLite consensus disorder prediction 143 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00270 Seca-Chr12 2470101 2474225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00270 38 133 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 1.44e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00270 K12900 - gmx:100788749 198.364