Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00270 | ATGGGAAGGTATCGAAGCCGAAGCCGAAGCTACAGCCCTCGACGGCGTAGCAGAACCCCACCGCGCGGACGCAAGCGCTACGATGATGATCGCGGTGACAGCAGGTCACACAGAGACCGACGCTCACCTCTTCCTTCTGGCTTGCTTGTTCGTAATCTCCCCCTTGATGCTAGGCCTGAAGATCTTAGGACCCCATTCGAGCGCTATGGTCCTGTGAAGGATGTATATCTTCCTAGAAACTACTACACTGGTGAGCCTCGGGGCTTTGGATTTGTGAAGTATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACAGCTTAATCATACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACTCCTCAAGAGATGCGCCTTAGTTCTCGTTCAAGTGGCCGACAAGGAGGTGGTAGAAGGAGGGCTAGGACAAGGTCCCCAAGACGCCGATATCGATCCTACTCTAGGTCTCCATCACCAGCCAGGGATGATTCAAGATAA | 522 | 0.5096 | MGRYRSRSRSYSPRRRSRTPPRGRKRYDDDRGDSRSHRDRRSPLPSGLLVRNLPLDARPEDLRTPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRYGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRLSSRSSGRQGGGRRRARTRSPRRRYRSYSRSPSPARDDSR. | 174 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00270 | 173 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Seca12g00270 | 173 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 47 | 166 | - | - | |
Seca12g00270 | 173 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
Seca12g00270 | 173 | SMART | rrm1_1 | 47 | 120 | IPR000504 | GO:0003723 | |
Seca12g00270 | 173 | FunFam | Serine/arginine-rich SC35-like splicing factor SCL28 | 2 | 138 | - | - | |
Seca12g00270 | 173 | SMART | rrm2_1 | 47 | 120 | IPR003954 | GO:0003676 | |
Seca12g00270 | 173 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Seca12g00270 | 173 | Gene3D | - | 2 | 134 | IPR012677 | - | |
Seca12g00270 | 173 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 118 | IPR000504 | GO:0003723 | |
Seca12g00270 | 173 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 124 | IPR000504 | GO:0003723 | |
Seca12g00270 | 173 | MobiDBLite | consensus disorder prediction | 124 | 173 | - | - | |
Seca12g00270 | 173 | SUPERFAMILY | RNA-binding domain, RBD | 48 | 152 | IPR035979 | GO:0003676 | |
Seca12g00270 | 173 | MobiDBLite | consensus disorder prediction | 143 | 159 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00270 | Seca-Chr12 | 2470101 | 2474225 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00270 | 38 | 133 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 28.571 | 1.44e-07 | 48.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00270 | K12900 | - | gmx:100788749 | 198.364 |