Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00255 ATGGGTTGTGTCCATGGCAAGTGTTGCTGCGGCAATTCTTCATCAGATGATGGCTCTAGGAACTACCGAGAAATTGGCTTCCGTAGGAAGAACGTAATTGCTCAGAGATCACTGAAGCATGTTGCTGTTCCTTCCCACAACTTCATTTTGGAATACACTTTTCTCACACAACGGGGATACTACCCTGACTCACCGGATAAAGAAAACCAAGATAGTTTCTGCATTAGGACACAAGTCCAAGGTAATCCCAATATCCATTTCTTTGGTGTCTATGATGGGCATGGTCAATTTGGTAGCCAGTGTTCCAACTTTGTTAAGGATAGGTTGGTAGAAAAATTATCAAACGACCCTGCATTGGTGGAGGACCCTGTCCAGGCTTACTCTTCTGCGTTCTTGACAACAAATCAAGAATTGCATATTAGTGAGATTGATGATTCTATGAGTGGCACTACCGCAATTACGGTGCTTGTTATTGGAGACACCCTATATGTTGCTAATGTTGGTGATTCAAGAGCTGTGCTAGCTGTTAAGGATGGGAATCGCATCATTGCTGAGGACTTGTCCTCTGATCAGACACCATTTCGGAGAGATGAATATGAGAGAGTGAAACTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATCAAGGATCCGAATATCCAACATTGGGGTGATGAAGAGAGTCGGGGTGGTGATCCTCCGAGATTGTGGGTTCCAAATGGGATGTATCCTGGAACTGCATTTACAAGGAGTATAGGGGACAGTTTGGCGGAGACTATTGGTGTCGTTGCTATCCCAGAGGTGTCAACAGTTAAGCTGACACCTAATCATCTTTTTTTTGTTGTGGCAAGTGATGGCGTATTTGAATTCCTCTCAAGCCAAACTATTGTTGATATGGCAGCAGGCTATACCGATCCTGGCGATGCATGTGAAGCTATTGCTGAAGAGTCATATAAACTATGGTTGGAACTTGAGAACCGAACAGATGATATAACAATCATCATTGTTCAGATCAAAGGCCTCACTAGTGTATGGATTGTTGAATATATTCCTTTTGTGTCTTTTGTTTTTTATGTTTTCATGATTCAGGCTTGTTTAAAGATTCTAAATTTGTAA 1125 0.4249 MGCVHGKCCCGNSSSDDGSRNYREIGFRRKNVIAQRSLKHVAVPSHNFILEYTFLTQRGYYPDSPDKENQDSFCIRTQVQGNPNIHFFGVYDGHGQFGSQCSNFVKDRLVEKLSNDPALVEDPVQAYSSAFLTTNQELHISEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIIAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVVAIPEVSTVKLTPNHLFFVVASDGVFEFLSSQTIVDMAAGYTDPGDACEAIAEESYKLWLELENRTDDITIIIVQIKGLTSVWIVEYIPFVSFVFYVFMIQACLKILNL. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00255 374 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 46 343 - -
Seca12g00255 374 CDD PP2Cc 67 341 IPR001932 -
Seca12g00255 374 ProSiteProfiles PPM-type phosphatase domain profile. 51 341 IPR001932 -
Seca12g00255 374 ProSitePatterns PPM-type phosphatase domain signature. 87 95 IPR000222 GO:0043169
Seca12g00255 374 PANTHER PROTEIN PHOSPHATASE 69 340 IPR015655 GO:0004722|GO:0006470
Seca12g00255 374 Gene3D - 47 343 IPR036457 -
Seca12g00255 374 SMART PP2C_4 47 339 IPR001932 -
Seca12g00255 374 Pfam Protein phosphatase 2C 74 319 IPR001932 -
Seca12g00255 374 SUPERFAMILY PP2C-like 42 343 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00255 Seca-Chr12 2361300 2364461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00255 1 346 PP2C-type Phosphatase Gene Family AT3G06270 69.914 1.03e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00255 - - gmx:100797866 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00255 12 2361300 2364461 Seca12g00255 12 2361300 2364461 ECH
Seca12g00255 12 2361300 2364461 Seca6g04548 6 113089326 113093671 PCT