Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00227 ATGGCACTGCCTGTACTTAGTGCACCCCAAATTCTATCGCTTCGGCGATTTGGAATTTCAAAGTTATCAGTGTCGGAGATCCCTCTTTCAACGCCAACAAAATGTCCAAGCATCCTTTCCCTGTCAATTTCTGCATCTACCTCTCTTCGCTACGCGCCTTTTCCACGGTTTTGCTGCACAACCAACTCTATGCCTTCTTCAACCAAAATCTTTATCAAAGTCATTATACTGAAGTCTTCATGGTGGGCCAATGCAGGGCTTCCTCTCTCAACCTCTGAAGGACGTTTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTAATCAAGTCAAGCTTATGATAGACAAAGAATCTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCACAATCGGCTGTGAAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACGACTGCAAAGCCCATATCATCAAGAAGTTGGAAGAGGACAACAGCCTACAAATTTTGA 519 0.422 MALPVLSAPQILSLRRFGISKLSVSEIPLSTPTKCPSILSLSISASTSLRYAPFPRFCCTTNSMPSSTKIFIKVIILKSSWWANAGLPLSTSEGRLMKVFSEFGEVNQVKLMIDKESGQSLGFAYIWFVKEESAQSAVKEMNGKFFDGRFIYVTTAKPISSRSWKRTTAYKF. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00227 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 158 IPR000504 GO:0003723
Seca12g00227 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 151 IPR000504 GO:0003723
Seca12g00227 172 SMART rrm1_1 85 154 IPR000504 GO:0003723
Seca12g00227 172 SUPERFAMILY RNA-binding domain, RBD 86 164 IPR035979 GO:0003676
Seca12g00227 172 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 62 166 - -
Seca12g00227 172 Gene3D - 59 169 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00227 Seca-Chr12 2102658 2105015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00227 87 158 Eukaryotic Initiation Factors Gene Family AT3G11400 38.889 1.86e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00227 - - psat:127073405 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00227 12 2102658 2105015 Seca12g00227 12 2102658 2105015 ECH