Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00227 | ATGGCACTGCCTGTACTTAGTGCACCCCAAATTCTATCGCTTCGGCGATTTGGAATTTCAAAGTTATCAGTGTCGGAGATCCCTCTTTCAACGCCAACAAAATGTCCAAGCATCCTTTCCCTGTCAATTTCTGCATCTACCTCTCTTCGCTACGCGCCTTTTCCACGGTTTTGCTGCACAACCAACTCTATGCCTTCTTCAACCAAAATCTTTATCAAAGTCATTATACTGAAGTCTTCATGGTGGGCCAATGCAGGGCTTCCTCTCTCAACCTCTGAAGGACGTTTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTAATCAAGTCAAGCTTATGATAGACAAAGAATCTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCACAATCGGCTGTGAAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACGACTGCAAAGCCCATATCATCAAGAAGTTGGAAGAGGACAACAGCCTACAAATTTTGA | 519 | 0.422 | MALPVLSAPQILSLRRFGISKLSVSEIPLSTPTKCPSILSLSISASTSLRYAPFPRFCCTTNSMPSSTKIFIKVIILKSSWWANAGLPLSTSEGRLMKVFSEFGEVNQVKLMIDKESGQSLGFAYIWFVKEESAQSAVKEMNGKFFDGRFIYVTTAKPISSRSWKRTTAYKF. | 173 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00227 | 172 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 86 | 158 | IPR000504 | GO:0003723 | |
Seca12g00227 | 172 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 86 | 151 | IPR000504 | GO:0003723 | |
Seca12g00227 | 172 | SMART | rrm1_1 | 85 | 154 | IPR000504 | GO:0003723 | |
Seca12g00227 | 172 | SUPERFAMILY | RNA-binding domain, RBD | 86 | 164 | IPR035979 | GO:0003676 | |
Seca12g00227 | 172 | PANTHER | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 | 62 | 166 | - | - | |
Seca12g00227 | 172 | Gene3D | - | 59 | 169 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00227 | Seca-Chr12 | 2102658 | 2105015 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00227 | 87 | 158 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 38.889 | 1.86e-10 | 56.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00227 | - | - | psat:127073405 | 184.496 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca12g00227 | 12 | 2102658 | 2105015 | Seca12g00227 | 12 | 2102658 | 2105015 | ECH |