Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00226 ATGAATATTTTTTCGGTATCATCCTCCGCTGCCTGCAAGCCCCTAGTGACTAATTTCCAACCGGCACTCACCACCATGGATTCCTTGTTTCACCACCGTAAGGAAAAAGTGGTTGTGATATTGGGCGCCACTGGCACCGGGAAGTCGAAGCTAGCCATAGACTTAGCCACCCATTTCCCACCGGGTGAGGTTATAAACTCTGACAAAATGCAAGTTTACAAAGGGCTTGACATCACAACTAACAAGGTAACCCAACAAGAGTGTCGTGGGGTCCCACATCATCTGCTTGGAATGATTGATCCTAATTCCAATTTCACTGCCAACGACTTTTGTCACCACGCTTCTCTCACAATTGCTTCCATCCTTGGAAGGGATGGCTTACCCATCATTGCTGGTGGGTCCAATTCCTTCATCGATGCTTTGGTCAACCACCACCCTGAGTTTCGCTTAAGGTACCACTGCTGCTTCCTCTGGGTTGATGTCTCCCTCCCTGTGCTCCATTCCTCTCTGTCTTCGCGCGTGGATCGCATGATTGAGGCTGGGCAAGTGGAAGAGGTTCGTGAGTTTTTTGACCCCAAAGAGGACTACACGAGAGGGATAAGAAGGGCCATTGGTGTCCCTGAATTCGATGAGTTTCTGAGAGCAGAGGCCAGAGGAGCAGATGAAAGAACCAAGGAAAGGCTCCTTGAGGCTGCCATTGCCAACATCAAAATCAATAACTGCAAGCTCGCGAACCGTCAGCTCCAGAAGATTCGTCGACTTTACAACATGTGGAAACGGAATAATTATGTGCATCGTCTTGATGCAACAGAGGTGTTCCTCAAGACTAACCCTCAGGAAGCAGAGGAGGCTTGGGAGGATCATGTTTTGGCCAAGGGCCGTAGGATCCTCCATAAGTTTCTCTATGAGGAAACCCACGGTTTTGTGTCACCCAAGGCCGTGATTTCTCCGGCGCCGCCGTCAGCCATGGCAGCGGTTAAAAGGCATGGAGCAAGAGTGGACTACTAG 1008 0.499 MNIFSVSSSAACKPLVTNFQPALTTMDSLFHHRKEKVVVILGATGTGKSKLAIDLATHFPPGEVINSDKMQVYKGLDITTNKVTQQECRGVPHHLLGMIDPNSNFTANDFCHHASLTIASILGRDGLPIIAGGSNSFIDALVNHHPEFRLRYHCCFLWVDVSLPVLHSSLSSRVDRMIEAGQVEEVREFFDPKEDYTRGIRRAIGVPEFDEFLRAEARGADERTKERLLEAAIANIKINNCKLANRQLQKIRRLYNMWKRNNYVHRLDATEVFLKTNPQEAEEAWEDHVLAKGRRILHKFLYEETHGFVSPKAVISPAPPSAMAAVKRHGARVDY. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00226 335 Pfam IPP transferase 150 253 - -
Seca12g00226 335 Pfam IPP transferase 71 145 - -
Seca12g00226 335 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 264 - -
Seca12g00226 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 192 IPR027417 -
Seca12g00226 335 Gene3D - 34 301 IPR027417 -
Seca12g00226 335 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 300 IPR039657 -
Seca12g00226 335 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00226 Seca-Chr12 2088403 2091095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00226 151 313 C2H2 Transcription Factor Family AT2G27760 31.217 2.32e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00226 K10760 - gmx:100778430 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00226 12 2088403 2091095 Seca6g04515 6 112784664 112786646 PCT