Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00221 ATGGGTGTTTCATGGAGCAGTAACGGTAACGGTAACGGTAACAGTAACAGAAGAAGAAACGGTTACTTTCAGCATCCACCTCCTCATCTCCCACCCCCTTACTATTACTCTCATCCTCCTCCACCGCCGTCACTGCTGCCACCGCCACCGCCACCGCCTCAAGGTTACTATTTTACCTCGACTAACCCTTCTACTGCCAACTACGTGACTCCTCCTCCTCACACTCAGTATTATTCAAATGGTTACACTGCCAATTCCATGCTCCGTCCCCTTCATCCCCAACCCTTTTATGCAAATCCGGGTCAGCAGGGTCAACCCGGGGTTAGTCCTCCACCCTATGTTGACCATCAAACCGCTAAGAAGATAAGGAATGATGCCAATTTGCATAAACATACTCTGCGCCTCGACGTTGATCCTAACAATCCTGATCACCACTTGATTTCCTTCGATTTTGATGCCCTCTATGATGGCAGCATTACAATCTTCTACTTAGCAAAAGAAGAAGAAAATTGTAAGTTTATTCCTCTATTGCCTGAAGCATTTGAGCCAATCACATTCCCCTTTCAGAAAGGAGTTGGTCAGAAATTTTATCAGCCTTCAGGAACGGGTATTGACCTGGGTTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGAAGAAGATGTGTTTCCCCTCGTAATATGTGCTGAAACAAATTCGACAACTCCTTTGGCAGATGAAACTCCCGGTAATTCCGAACTAGATGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGCAATGGCAGTGGTTCTTTTCAAGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATAATGTTCGCTATGAGCTGAGAGAGTTATATGGAATAGGAAGTTCAACAGCAGCAGATTTTGATGATAGTGATCCTGGGAAGGAGTGTGTGATATGCATGACTGAACCCAAGGACACTGCTGTCTTACCTTGCCGACATATGTGTATGTGTAGTGAGTGTGCAAAAGCTTTGCGGTTACAATCAAATAAATGCCCTATATGCCGTCAGCCTATTGAGGAACTTATAGAGATCAAGATAAACAATGGCAACCAATGA 1101 0.4441 MGVSWSSNGNGNGNSNRRRNGYFQHPPPHLPPPYYYSHPPPPPSLLPPPPPPPQGYYFTSTNPSTANYVTPPPHTQYYSNGYTANSMLRPLHPQPFYANPGQQGQPGVSPPPYVDHQTAKKIRNDANLHKHTLRLDVDPNNPDHHLISFDFDALYDGSITIFYLAKEEENCKFIPLLPEAFEPITFPFQKGVGQKFYQPSGTGIDLGFFELDDLSKPSPEEDVFPLVICAETNSTTPLADETPGNSELDASPHMQITQAVLEKSNGSGSFQVKVVRQILWIDNVRYELRELYGIGSSTAADFDDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQPIEELIEIKINNGNQ. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00221 366 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Seca12g00221 366 PANTHER MAHOGUNIN 55 360 IPR045194 GO:0061630
Seca12g00221 366 SUPERFAMILY RING/U-box 310 356 - -
Seca12g00221 366 MobiDBLite consensus disorder prediction 90 116 - -
Seca12g00221 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 360 IPR013083 -
Seca12g00221 366 MobiDBLite consensus disorder prediction 58 72 - -
Seca12g00221 366 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g00221 366 FunFam probable E3 ubiquitin-protein ligase LOG2 295 360 - -
Seca12g00221 366 MobiDBLite consensus disorder prediction 25 57 - -
Seca12g00221 366 CDD mRING-HC-C3HC5_MGRN1-like 309 350 IPR045195 -
Seca12g00221 366 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Seca12g00221 366 SMART ring_2 311 349 IPR001841 -
Seca12g00221 366 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00221 Seca-Chr12 2040067 2042925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00221 113 366 C3H Transcription Factor Family AT3G06140 64.314 6.12e-111 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00221 - - gmx:102665712 504.597