Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00218 ATGGCCGCCACCTCAGCAGCTATGGATCAATTTGACGAATCCATGAAGAAACAAATGTCATCACTTTTGCGGGCTATGTTTTTAGTTAAATCCCTCAAAGAGGACAATATTCCTTGCGAAATTGACGAGGGCCTCTTTTTGGGTTCAGTTGGCACTGCCGCTAACAAGGATGGTTTGAAAAACGTGAATGTCACTCACATTTTGACTGTGGCTGGTAAATTGACACCTGCGCATCCTGGGGATTTCGTCTATAAAACTATAGATGTTGCTGACAGAGATGATACCAACTTAAAACAATACTTCAAAGAATGTTTTGATTTTATTGATGAAGCCAAAAGACATGGTGGACGGGTTCTGGTTCATTGTTATGCTGGAAAATCAAGGAGTGTGACTATTGTAGTGGCATATCTGATGAAGACTCGAGGAATGAGCTTATCTGAAGCTCTGCAGCATGTAAAAAGCAAACGGCCACAAGCAGCTCCCAATCCTGGTTTCATTCGTCAACTGGAGGAGTTTGAAAAATCTCTTCAAGACATCGAAGTGCCTGAGTAG 552 0.4221 MAATSAAMDQFDESMKKQMSSLLRAMFLVKSLKEDNIPCEIDEGLFLGSVGTAANKDGLKNVNVTHILTVAGKLTPAHPGDFVYKTIDVADRDDTNLKQYFKECFDFIDEAKRHGGRVLVHCYAGKSRSVTIVVAYLMKTRGMSLSEALQHVKSKRPQAAPNPGFIRQLEEFEKSLQDIEVPE. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00218 183 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
Seca12g00218 183 Pfam Dual specificity phosphatase, catalytic domain 45 174 IPR000340 GO:0008138|GO:0016311
Seca12g00218 183 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 32 176 - -
Seca12g00218 183 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 178 IPR020422 GO:0006470|GO:0008138
Seca12g00218 183 Gene3D Protein tyrosine phosphatase superfamily 15 180 IPR029021 -
Seca12g00218 183 CDD DSP 38 171 - -
Seca12g00218 183 FunFam Dual specificity phosphatase 12 39 183 - -
Seca12g00218 183 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Seca12g00218 183 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 177 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00218 Seca-Chr12 1997085 2000929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00218 40 177 Protein tyrosine phosphatase (PTP) family AT3G06110 62.319 2.39e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00218 - - lang:109352945 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00218 12 1997085 2000929 Seca12g00218 12 1997085 2000929 ECH