Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00213 ATGGCCTTTGTCTTTCACCATAAGCAGCATCTTCTGAGGTTGCTTCTGACCCTTTTCGTAACGTTGCTTCCCTTACCTACGATTGTTGCTCAAACTCACAGGAACATTACATTGGGTTCCTCTCTCACAACGCTGCAAAACAACTCCTGGACATCACCATCGGGTGAATTTGCATTTGGTTTCCAGCAGATTGAGGAAGATGGGTTCTTATTAGCCATCTGGTTCAACAAAATACAAGAAAGAACTATTGTGTGGTATGCCAATGGTCAAAACTTAGTAGGAAAGGGTTCTAAAGTGGAACTCACCTCAGAGGGGCAATTCTGGCTCAAAGATCCCAGTGGCAAGGTGATATGGAATCCTCCTAACTTTAATGAAGTTGCTCATGCAGCCTTGCTTGATAGTGGCAACCTTGTGTTGGTAGATCAAGATTCTGTCACTATATGGCAGAGTTTTGATTATCCAACTGACACACTTTTACCAGGACAGATTCTCTCAAAAGAATCACCATCTCCAAGGCTCGTTTCACGTTATCTTGAATCAAACTTCACTAACGGGAGATTCCAGTTTTCTCTACAAAAGGATGGGAATCTTGTGCTCTACACACAACATTTCCCACAAGATAATAATAATTATGCTTATTGGTCTACTCAAGTTTTTGCCAAGAGCTTTAGGTGGGTCTTCAACCAATCTGGGTATATTTTCCTTGAGTTTAGTAATGGAAGCACAATCAATATGATATCTTCAACTGGCCTCTCCACCAAAGATTTCTATCAGAGAGCAATTCTTGATTATGATGGAGTTTTCAGGCACTATGTCTACCCCAAGAACACTAGTTCCAGTAAAGAAAGATGGTCCAATTGGACAGCTTCATCAGTCACAATACCCTCAAATATCTGTCTGAGAATTATAGGAGGAATGGGAGGTGGAGCATGTGGGTACAACAGCTACTGCACGTATGATGGTACTAAGAGATGCCACTGTCCACGTGGGTACAGCTTCATTGATCCAAATGATGTGATGAAAGGATGCAAACAGGACTTTGTTCCACAAAGTTGTGATGAACCTTCACTTCTCTTTTATATGGATGATATTCCAAATGCAGATTTCCCTGGAGCTGATGCTGAAGATTTTGAATCTGTAACTGAGGATTGGTGCAGACAGGCCTGCTTGAATGATTGTTTCTGTGCTGCTGCCATTTTCAAAGAAGGTAAATGTTGGCCTAAGAGGCAACCCCTCTCCAATGGAAGAATAGATACTGACTTTACAGGTAAAGCTCTTATCAAGATAAGAAAAGTTAACTCTACTCTGAAACCTGATTTTCCTATTAACAAGGATGATGATGATGATGGTGCATCAAATTCAAAGCAAATTATCATTGGATCTGTGTTTTTAAGTATTTCCGGGCTGCTGAACTTTCTCTTCATAGTGGTGGCTTGTTTAGCTGCATCCCGGTTTGGCTACTGGAATTCCAAGGTGGCTGAGTCTTCCCAATCCCAAGTCATCACTAAGCTCAATCTCAGAAGTTACACTTATGAAGAGTTAAGCAAAGCAACGAATGGATTCAATGAAGAACTTGGTCATGGTGCATTTGCAATAGTTTACAAAGGAGTTATCCCAGGAGTTAGTGAGAACATTGTTGCTGTTAAGAAGCTAGATACAAAGTCAAGAGGAATAGAGGAAGAATTTAAAGCAGAAGTGAGTACAATTGGTCAAACAAATCATAGAAATCTTGTACAACTGATAGGTTTCTGTGATGAAGGGCAGCACAGACTACTAGTATATGAATTCATGAGCAATGGATCTTTAGCAAGCTTCCTTTTTGGAGCACAAAAGCCAAGATGGTATCAAAGAAAGGAAATTGCATTGGCAATAGCAAGGGGACTCTTTTATCTGCATGATGAGTGTCGCACACAGATCATACATTGTGACATCAAGCCCCAAAATGTCCTTCTTGACAACAATTACACAGCAAGAATATCTGATTTTGGTTTAGCCAAGCTTTTGAAGCTTGAGCAGACTCGGACTACTACTGGAGTCAGAGGAACTAAAGGGTATGTTGCCCCTGAATGGTTCAGAAATGTTCCTGTTAGTGTAAAGGTGGATGTTTATAGCTATGGAATTTTGTTGCTGGAGATAATCTGTTGTAAGAAGAACTTTGAAGTAAATACTGATGACATGGTTATATTGGCGGATTGGGTATATGACTCCTTCAAGGATGGTAATGTGAGTGTGGTGGTGGAAGATGATAAAGAAGCAATGGAGGACATGAAGAGGGTGGAAAGGTTTGTGATGACTGCTATTTGGTGCATTCAGGAAGATCCATCACTCAGACCAACTATGAAGAAAGTGTTACTAATGCTTGAAGGGTCTGTTGACGTGCCCATTCCGCCTGATCCATCTTCTTTTTAA 2409 0.4076 MAFVFHHKQHLLRLLLTLFVTLLPLPTIVAQTHRNITLGSSLTTLQNNSWTSPSGEFAFGFQQIEEDGFLLAIWFNKIQERTIVWYANGQNLVGKGSKVELTSEGQFWLKDPSGKVIWNPPNFNEVAHAALLDSGNLVLVDQDSVTIWQSFDYPTDTLLPGQILSKESPSPRLVSRYLESNFTNGRFQFSLQKDGNLVLYTQHFPQDNNNYAYWSTQVFAKSFRWVFNQSGYIFLEFSNGSTINMISSTGLSTKDFYQRAILDYDGVFRHYVYPKNTSSSKERWSNWTASSVTIPSNICLRIIGGMGGGACGYNSYCTYDGTKRCHCPRGYSFIDPNDVMKGCKQDFVPQSCDEPSLLFYMDDIPNADFPGADAEDFESVTEDWCRQACLNDCFCAAAIFKEGKCWPKRQPLSNGRIDTDFTGKALIKIRKVNSTLKPDFPINKDDDDDGASNSKQIIIGSVFLSISGLLNFLFIVVACLAASRFGYWNSKVAESSQSQVITKLNLRSYTYEELSKATNGFNEELGHGAFAIVYKGVIPGVSENIVAVKKLDTKSRGIEEEFKAEVSTIGQTNHRNLVQLIGFCDEGQHRLLVYEFMSNGSLASFLFGAQKPRWYQRKEIALAIARGLFYLHDECRTQIIHCDIKPQNVLLDNNYTARISDFGLAKLLKLEQTRTTTGVRGTKGYVAPEWFRNVPVSVKVDVYSYGILLLEIICCKKNFEVNTDDMVILADWVYDSFKDGNVSVVVEDDKEAMEDMKRVERFVMTAIWCIQEDPSLRPTMKKVLLMLEGSVDVPIPPDPSSF. 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00213 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 178 271 IPR036426 -
Seca12g00213 802 ProSiteProfiles Bulb-type lectin domain profile. 35 152 IPR001480 -
Seca12g00213 802 PIRSF SRK 6 802 IPR024171 GO:0004674
Seca12g00213 802 SMART blect_4 41 154 IPR001480 -
Seca12g00213 802 Gene3D - 153 282 IPR036426 -
Seca12g00213 802 FunFam Serine/threonine-protein kinase 155 302 - -
Seca12g00213 802 SUPERFAMILY Protein kinase-like (PK-like) 498 788 IPR011009 -
Seca12g00213 802 CDD B_lectin 44 154 IPR001480 -
Seca12g00213 802 Gene3D Transferase(Phosphotransferase) domain 1 597 792 - -
Seca12g00213 802 FunFam S-receptor-like serine/threonine-protein kinase 489 596 - -
Seca12g00213 802 Gene3D Phosphorylase Kinase; domain 1 484 596 - -
Seca12g00213 802 SMART serkin_6 519 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00213 802 Pfam Protein kinase domain 522 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00213 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 216 IPR036426 -
Seca12g00213 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Seca12g00213 802 ProSiteProfiles Protein kinase domain profile. 519 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00213 802 Pfam D-mannose binding lectin 82 166 IPR001480 -
Seca12g00213 802 Gene3D - 28 152 IPR036426 -
Seca12g00213 802 ProSitePatterns Protein kinases ATP-binding region signature. 525 550 IPR017441 GO:0005524
Seca12g00213 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 597 795 - -
Seca12g00213 802 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 46 798 - -
Seca12g00213 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 30 152 - -
Seca12g00213 802 CDD PAN_AP_plant 348 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00213 Seca-Chr12 1952632 1955040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00213 455 799 Receptor kinase-like Gene Family AT4G18250 39.496 1.75e-67 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca12g00213 Pkinase 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00213 - - vvi:109122813 904.434