Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00208 ATGGACACTGGCACACTCTCTTTACTCTCACCTCTTCCTATTTCGCGCGTTCTCTCGTCTCAGAAGCCAACTCCAATTCATAATTGTTACATTCCTCCTTCACATAACCACTTTCTTAGATTTCTCTCCTACTCCACTAACCACACCAAGTTCACAACTCCGCAAGCCATCGTAAACCCTTCTCCCATAACCCCTACAGCCGATGATGCAGTGACCACTCCCTCTCTCAGAGAATTATGCCAATCTCATGTTCCCGACAATATACTGCAAAGGATGGAAGAGATTGGATATGTCTTGCCTACAGATATCCAGAGGCAAGCATTGCCTTATCTTTTTTCCGGGCGTGACTGCATACTTCATGCGCAGACAGGTTCTGGGAAGACACTTACATACCTACTTTTAATCTATTCCATCATCAACGCCAGAAAATCCTCTGTGCAAGCACTGATTTTGGTGCCCACCCGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAACTGGAGTTGAGGGAGAGCAGAAGTCATGTACCATCATGGCTCTGTTAGACGGAGGAACATTGAGAAGACATAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGGTAGACAACTTTTTTTGCTTGAAACTGTGCGGGTGCTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTTTCTTCGGAAGATTTTGACTTCATATTCATCTTGCAATAACCGCCAGACGGTTTTTGCCAGTGCATCTATACCACAGCACAACCGATTTCTTCATGACTGTGTGCAGCAAAAATGGACTAAGAGTGATGTGATCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAATATGTGATAAGAAAAGAAAGCTACAAACCCTGTTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCTAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTTATTGACTTTCTGAAAACATCATATCAAGGTTCTTTGGATATCCTCCTTCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTTTGTTGGAGGTTAGAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCAGAAGTGTCTCACATATACAACTTTGATCTGCCAAAGACTGCCATAGATTATCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACATGAATTGTACTGTTACTAGCATTATAGTTTCAGAGGAGCGGTTTGTTCTTCAGAGATATGAAAATGAGTTGATGTTTATTTGTGAAGAGCTTATACCATAA 1431 0.4284 MDTGTLSLLSPLPISRVLSSQKPTPIHNCYIPPSHNHFLRFLSYSTNHTKFTTPQAIVNPSPITPTADDAVTTPSLRELCQSHVPDNILQRMEEIGYVLPTDIQRQALPYLFSGRDCILHAQTGSGKTLTYLLLIYSIINARKSSVQALILVPTRELGMQVTKVARMLAAKPTGVEGEQKSCTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLGRQLFLLETVRVLVVDEVDFIFNSSKQVSFLRKILTSYSSCNNRQTVFASASIPQHNRFLHDCVQQKWTKSDVIHIHVSAVEPMPSRLYHRFIICDKKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLLIDFLKTSYQGSLDILLLEDDMNFNSRAASLLEVRKGGGHLLVATDIAARGVDLPEVSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMNCTVTSIIVSEERFVLQRYENELMFICEELIP. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00208 476 SMART helicmild6 356 440 IPR001650 -
Seca12g00208 476 SMART ultradead3 96 311 IPR014001 -
Seca12g00208 476 Pfam DEAD/DEAH box helicase 101 274 IPR011545 GO:0003676|GO:0005524
Seca12g00208 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 442 IPR027417 -
Seca12g00208 476 Gene3D - 45 287 IPR027417 -
Seca12g00208 476 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 290 IPR014001 -
Seca12g00208 476 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 476 IPR001650 -
Seca12g00208 476 CDD DEADc 88 283 - -
Seca12g00208 476 CDD SF2_C_DEAD 309 438 - -
Seca12g00208 476 Gene3D - 304 473 IPR027417 -
Seca12g00208 476 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 72 467 - -
Seca12g00208 476 Pfam Helicase conserved C-terminal domain 319 438 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00208 Seca-Chr12 1934070 1939317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00208 78 474 Eukaryotic Initiation Factors Gene Family AT1G72730 27.941 1.39e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00208 - - gmx:100786205 786.178