Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00196 ATGGAAGATGACGAGCCTCCTTGTCCTTCACCCTTTCCCCCTCTATCCTCTTCTTCTTCTTCTTCTTCGCTTCTCAAGGACATCTCCAACTTCAAAACCCCCATACGCCCTCCTCTCTCTCTCACTGCCAAATCTCCCTCCACCCAATTCTTCACTGCTTCCAAACCAACCACTCTCCAACGCCGCCCCAAGAAATCTGCTACCGCCGCCAGGAAACTCAAAGCTTTCCAACTGGAGCAGTCCCAGTCCTCCAGAAAGGCCCAAATCAAAAAGGAACTGTCCCTCAAATCCCTAGCAAAGTCCCTCACCGTTTGGCTCAACTTCTTGCTCGAATGCCCTGCCTCCTGCGGTTGCGACCTCTCCATCGCCGGAGTCCAGATCTCCGACGCCACTCCGGCGACCAAGGGGAAGCGGAGCACTGGCTCGGGAATCTCAGTCGGAGTTGATTCGACCTGGCGAACTCCCAAGCGCCAGAGGAAAACGTGGTCGAGTGTTGGTAAGCAAAATGCCGCGGTCGAGTTGCCGAATAGCTCGTTTTCTCAGTTGAGGGATTCACTGAAGGATATCTGCAGTTTCGAGGATATGAAGCAGCGAATGATGGTTTATCTGAGCCTCGGAACTTGTGAAGACATCTTCCGAGTGATGACTCGGGTGACAAAGACAATTGATGAAGGAAGGCTAAATTTGAAGGCCCACTGCCCGATAGTTACAGATGTTGGGTTGAAGGACAAGGCCACGAGAATTCTTATGTGTTATAATCCAACTTGGCTGCGAATTGGATTATATATAATATTTGGTGGTGACTCCTTGGTGTTAAATGGGGATATGGATTCTGATCAAGATGTCATATTTTTGAAAATGGTCATTGGCAAACTATTTTTCTCACATGAGGGTTTAGCAAAAGCATATGCATATAACAAGATGGTTGAAGGAGTATATAGGTCGGGATACTATGAGAATTTAGGGAATGTGATTTTGAAGAGAATATTGTTACTTGTGCTTATCCTGGATAAAGCTAAATGTCAAAGTTGCCTCCCGCTTGAGTATGGTATTGACGGATTGGATGGGGGTTCCCCTTTATTATTCAAAGCAGAATCCTGGATTAAATCAAGCAGTCAAGTAATCCATGAATTTCTATCGTCTGATGTAATGCACGGAGAAGGCAATCTTCTAGCACATTTGGTTATTTTAGGTTACAAAGTATCTCATCAACAGGGGCCTCTTGTTGAGTATGATTTCAGGGTCAGAGATTTATTTGTGGATCTCCAAGATGGACTAAAACTGTGTAGAGCTATTCAGCTGTTGCTACACAATTCTTCTATCCTCAAGAACTATGATGCATCATCATGGTGTGGACAGAAAATTTTAGTTCCCTCAGATACTCCTAAGAAAAATCTGGCGAACTGTGGACTTGCCCTACAATATCTCATGCAAGCTGGTGTGTCGCTACTTGATGAAGATGACACGATGATTGAGACAGATGATATTGTTAATGGAGATAAAGAACTTATACTTTCCTTGCTCTGGAATATGTTTGTTCAATTGCAGCTACCTCTTTTGGTTGATAAAACAAGTTTAGCTAAGGAAATTTCAAAAATTCAAGGACTTGGCATGGATCTAATAAACTGTGCAAATTCCACTTCTCTGGAATTGCTTTTGAATTGGATTCAGGCTGTTTGTGACAATTATGACTGTCCAATTGACAATTTTCATTCCCTTGTTGATGGCAAAGCAATCTGGTGCTTACTTGATTATTACTTCCAGAAGGAACTTGATGATTCCTGCTCATTGAAGGAAGTTAATAAACAAAGTGGCAAGGCATCGATTTTGTCAGTCAATGAATATTCAGATGCACTGTACAATTTTATCTTGTCCCAGAAGTTGACAACTTTACTGGGGAATTTTCCAGAGGTACTTCAAATAAGTGAGCTACTTCAATACAATGGCGCTTGCAATGATCAAAGTGTGGTGATATTGTTGGTTTTCCTAGCAACCCAATTGTTTGTCAAGAAAAATATGGATCACTTGAATTTTCACAAGCTTTTGGGTAATCATTGCCAAAGACCGAACCAAAGACATTTGAGGATGATACAGTGCCTTTCATGTTCTAAATCTGTAAAAAATCCGGATGCTTCAGATGTGCATTCTGATGAAGATTATGCAAGAAAATTCAAGGCCATCCAGGCTTGGTGGCAAGGTATGGCTGAACAAAACCATATCATAAAACCATCTGTCTCTATTATGCAGAGATCCAGAACCACTGAATGCATCACCAACAATAGAAGAGAAAATGCCGCAAGAACAATACAATCACATATCAGAGGGTTGGTTGTACGGCGCAAGTTTCTGCAGATGGTGAATGCTGTTACCCTCTTGCAAACTGTTTTCAGAGCTTGGCTAAAAGTGAGGAAGGAGTCCGTCTGCATGATATTCACTACCGTTCAAGTCTATGACTTTGCATGTGAAATAATGAAGCAATCAGAATCATATAGAAGATATGCCATGCTTTTCGTTCATAGGCATTCTTTTTTGAGCTTGAAGAGGTCAGCACAGCTTATCCAGCAAGCTGTGAGGAGTTGGCTCTATTCGAGGCATCAACATGGATGTAGTATCAGTCCTGTTCATATGATTACAGATACAGTGACTGCTGCCACAACAGTTCAAACATTTGTTCGGGGTTGGATGGCACGATCGAGATATTTTCGTCAACTAGATCGGAAAAAGAAAGCTTTAAATTTAGCCACACAGAAAATTGCATTTGAACTTCAAACAAAAGCTGCTGTTAGCATTCAGCTTGCTTGGAAGAAGTTCATATCCTACAAGTCTTCTCAGAGGCAACACTTTGTTGCAATTAAAATTCAATGTAATTTCCGAAGGTGGTTCTTGAGAAAAAGATTTCTAAATCAAATTCAAGCTGTTATAAAAATTCAATCTTATTTTCGAATGTGGAGATGTATAAATGCTTTTCAGCACTTAAAAATTCTGTCTAAGGCAGCTATTGTCATTCAATCTTTCGTACGTGGTTGGATTGCACGGAAGGATGCTTGTGCACGTAGGAATCATATTGTTGAAATTCAGAAGCATTACCGTGGTTTGCTTGTGAGACGAGACTTTTTGTTTCAAAGAGACGCTATAGTAAGGATCCAGTGTGTCATTCGAAGCCTGAAATGCCAGAAGGCTCTCTATTGTCAGAAAGATGCTGCATTGGAGATCCAGCGCTTCATCAGAGGGCATTTAACTCGAAATCAGCTCTTAGGCAGTGCTTCCCAGTTACGCGCAGTCATTCCTGTTAGTTGCATTTCAAGACCAATGTGCTTCTCTAGTTTCCAACTGGAACTATTAATGTTTTCTGTTGTGAAATTGCAACGCTGGTGGAAGGGTCTCATGTCACATAAACTAATGAATAAGTCGGCCATCATTATTCAGTCTTGTACTCGTGGGTGGATAGCCAGGCGAAAGGCCACTGTTCACAAACGCCATGTTGTTGTCATGCAAGAACATGCCGCATTGGAGATCCAACGCTATATTAGGGGGGATTTAACTCGAAATCGGATATTAGGCGGTGCTTCTAAACTACGTGCAGCCGTTTCTGCTGGTTGCATTTCAAGACCCGTTGGCTATTGTAGTTTTCAGCTGGAACTTTTCTTGTTTTCAGTTGTTAAATTGCAACGATGGTGGAAAAGTCTCTTGTTACATAAATTAATGACAAAGTCTGCCATTATTATTCAGTCTCGTGCTCGTGGGTGGATAGCCAGGCGAAAGGCCACTGTTCATAGACATCGTATTATTGTCATCCAATCCCACTGGAAAGGTTACCTTGCACGTAGAGAGTCAAAAGAACAGCTATTGGATTTGCGCTTGAGAGTGCAAGAGTCTGCCAGAAATGTGGATGACAGCAAGCGACTTATAAACAGACTCTTGGCAGCACTGTCAGAGCTACTTAATATGAAGAGTCTAAGTAATATCCTTCATACTTGTTCAACACTGGATATGGCTACAAGACATTCTCAGAGATGTTGTGAAGAACTTGTGGCTGCTGGGGCTGTTGATACCTTGCTGTGGCTTACTCGATCAGTTAGCCGGAGTATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCAACTCTCAGAAACCTTGCCCGTTATCCTCATTTATTAGAAGTGCTGATCCAAAGTCAGGGTTCTGTGCAGACAATTGTCTTGGAATTACTGAGGAATAAGCAAGATGGTTACTTCATTGCTTCTGAACTTCTGAAGAAGATATGTTCAACTCACAAAGGCATTGAGACGATACTAAAATCCCCTGCCCTACTAAAACGACTGCACAGTCATGTTGAGGAGCTTACTAGGAAGGCCAATTACGAGAAAAGAAATGTTAGGGGTTCTTGTCCGTTTGTTAAAGAGAACAGAGAGAGAAGATTTAAGGAGGCTTCTGAGATTTTGAAGCTGATAAAACGCGCTTGA 4464 0.4203 MEDDEPPCPSPFPPLSSSSSSSSLLKDISNFKTPIRPPLSLTAKSPSTQFFTASKPTTLQRRPKKSATAARKLKAFQLEQSQSSRKAQIKKELSLKSLAKSLTVWLNFLLECPASCGCDLSIAGVQISDATPATKGKRSTGSGISVGVDSTWRTPKRQRKTWSSVGKQNAAVELPNSSFSQLRDSLKDICSFEDMKQRMMVYLSLGTCEDIFRVMTRVTKTIDEGRLNLKAHCPIVTDVGLKDKATRILMCYNPTWLRIGLYIIFGGDSLVLNGDMDSDQDVIFLKMVIGKLFFSHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLILDKAKCQSCLPLEYGIDGLDGGSPLLFKAESWIKSSSQVIHEFLSSDVMHGEGNLLAHLVILGYKVSHQQGPLVEYDFRVRDLFVDLQDGLKLCRAIQLLLHNSSILKNYDASSWCGQKILVPSDTPKKNLANCGLALQYLMQAGVSLLDEDDTMIETDDIVNGDKELILSLLWNMFVQLQLPLLVDKTSLAKEISKIQGLGMDLINCANSTSLELLLNWIQAVCDNYDCPIDNFHSLVDGKAIWCLLDYYFQKELDDSCSLKEVNKQSGKASILSVNEYSDALYNFILSQKLTTLLGNFPEVLQISELLQYNGACNDQSVVILLVFLATQLFVKKNMDHLNFHKLLGNHCQRPNQRHLRMIQCLSCSKSVKNPDASDVHSDEDYARKFKAIQAWWQGMAEQNHIIKPSVSIMQRSRTTECITNNRRENAARTIQSHIRGLVVRRKFLQMVNAVTLLQTVFRAWLKVRKESVCMIFTTVQVYDFACEIMKQSESYRRYAMLFVHRHSFLSLKRSAQLIQQAVRSWLYSRHQHGCSISPVHMITDTVTAATTVQTFVRGWMARSRYFRQLDRKKKALNLATQKIAFELQTKAAVSIQLAWKKFISYKSSQRQHFVAIKIQCNFRRWFLRKRFLNQIQAVIKIQSYFRMWRCINAFQHLKILSKAAIVIQSFVRGWIARKDACARRNHIVEIQKHYRGLLVRRDFLFQRDAIVRIQCVIRSLKCQKALYCQKDAALEIQRFIRGHLTRNQLLGSASQLRAVIPVSCISRPMCFSSFQLELLMFSVVKLQRWWKGLMSHKLMNKSAIIIQSCTRGWIARRKATVHKRHVVVMQEHAALEIQRYIRGDLTRNRILGGASKLRAAVSAGCISRPVGYCSFQLELFLFSVVKLQRWWKSLLLHKLMTKSAIIIQSRARGWIARRKATVHRHRIIVIQSHWKGYLARRESKEQLLDLRLRVQESARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATRHSQRCCEELVAAGAVDTLLWLTRSVSRSIPDQEVLKHALSTLRNLARYPHLLEVLIQSQGSVQTIVLELLRNKQDGYFIASELLKKICSTHKGIETILKSPALLKRLHSHVEELTRKANYEKRNVRGSCPFVKENRERRFKEASEILKLIKRA. 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 1258 1286 IPR000048 GO:0005515
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 1018 1047 IPR000048 GO:0005515
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 762 790 IPR000048 GO:0005515
Seca12g00196 1487 Gene3D - 400 516 IPR036872 -
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 1064 1093 IPR000048 GO:0005515
Seca12g00196 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 893 1014 IPR027417 -
Seca12g00196 1487 SMART arm_5 1336 1381 IPR000225 GO:0005515
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 882 909 IPR000048 GO:0005515
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 1134 1161 IPR000048 GO:0005515
Seca12g00196 1487 Gene3D - 544 669 IPR036872 -
Seca12g00196 1487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1218 1281 IPR027417 -
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 1235 1262 IPR000048 GO:0005515
Seca12g00196 1487 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1347 1394 IPR000225 GO:0005515
Seca12g00196 1487 Pfam Armadillo/beta-catenin-like repeat 1337 1381 IPR000225 GO:0005515
Seca12g00196 1487 SUPERFAMILY Calponin-homology domain, CH-domain 331 598 IPR036872 -
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 1066 1084 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 1236 1254 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 883 900 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 950 966 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 971 986 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 1136 1153 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 1260 1277 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 997 1014 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 1022 1038 IPR000048 GO:0005515
Seca12g00196 1487 Pfam IQ calmodulin-binding motif 764 782 IPR000048 GO:0005515
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 946 975 IPR000048 GO:0005515
Seca12g00196 1487 Gene3D - 1283 1479 IPR011989 -
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 995 1024 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 879 901 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 1234 1256 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 994 1016 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 968 990 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 945 967 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 784 807 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 761 783 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 1164 1186 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 1133 1155 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 1063 1085 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 1017 1039 IPR000048 GO:0005515
Seca12g00196 1487 SMART iq_5 1257 1279 IPR000048 GO:0005515
Seca12g00196 1487 Gene3D - 995 1042 - -
Seca12g00196 1487 Gene3D - 1133 1198 - -
Seca12g00196 1487 Gene3D - 1234 1282 - -
Seca12g00196 1487 Gene3D - 760 809 - -
Seca12g00196 1487 Gene3D - 943 994 - -
Seca12g00196 1487 Gene3D - 1043 1093 - -
Seca12g00196 1487 Pfam Calponin homology (CH) domain 414 512 IPR001715 GO:0005515
Seca12g00196 1487 ProSiteProfiles IQ motif profile. 1165 1194 IPR000048 GO:0005515
Seca12g00196 1487 SUPERFAMILY ARM repeat 1304 1444 IPR016024 -
Seca12g00196 1487 ProSiteProfiles Calponin homology (CH) domain profile. 384 516 IPR001715 GO:0005515
Seca12g00196 1487 MobiDBLite consensus disorder prediction 1 25 - -
Seca12g00196 1487 CDD CH_ASPM_rpt1 390 511 - -
Seca12g00196 1487 PANTHER UNCHARACTERIZED 882 1037 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00196 Seca-Chr12 1815831 1826679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00196 920 1014 Myosins gene family AT3G58160 35.052 3.64e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00196 K16743 - gmx:100817636 1660.97