Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00195 ATGCAGCCTGGCATGGCTCCACCGACCATGGCCCAACAGCCCAATCAACAATACCAACAACAGCAACAACCTTACATGATGATGCCGCCACAGCCTCAGCCTCCTCCGATGTGGGCCCCATCTGCCCAGCCTCCGGTTCAGTCGGTCCCTCCTCCACAATCGGTTCAACCTGCCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTACAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAAGGCGGCCGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCAAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGTGACTTGGCTGCGGATGTTACAGATTATCTTCTGCAGGACACATTTAGAACCCGGTATCCCTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGCCGAACAAAGGGTTATGGTTTTGTTAGGTTCGGAGATGAGAGTGAACAAGTTAGGGCTATGACTGAAATGCAGGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCAATCAGTCAAAAGGGTGTCAAGAGGCTCTATCATCTCTGAGCCTGGAACTGATTTCAGCTGAAATGTTACCATTTTAG 798 0.4787 MQPGMAPPTMAQQPNQQYQQQQQPYMMMPPQPQPPPMWAPSAQPPVQSVPPPQSVQPASADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSKAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQDTFRTRYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGNQSKGCQEALSSLSLELISAEMLPF. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00195 265 FunFam Polyadenylate-binding protein RBP45C 149 241 - -
Seca12g00195 265 MobiDBLite consensus disorder prediction 27 52 - -
Seca12g00195 265 CDD RRM1_SECp43_like 65 145 - -
Seca12g00195 265 CDD RRM2_SECp43_like 156 235 - -
Seca12g00195 265 SUPERFAMILY RNA-binding domain, RBD 25 145 IPR035979 GO:0003676
Seca12g00195 265 SMART rrm1_1 65 140 IPR000504 GO:0003723
Seca12g00195 265 SMART rrm1_1 158 232 IPR000504 GO:0003723
Seca12g00195 265 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g00195 265 SUPERFAMILY RNA-binding domain, RBD 150 244 IPR035979 GO:0003676
Seca12g00195 265 Gene3D - 5 148 IPR012677 -
Seca12g00195 265 Gene3D - 149 249 IPR012677 -
Seca12g00195 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 144 IPR000504 GO:0003723
Seca12g00195 265 FunFam Polyadenylate-binding protein RBP45 7 148 - -
Seca12g00195 265 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 242 - -
Seca12g00195 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 236 IPR000504 GO:0003723
Seca12g00195 265 MobiDBLite consensus disorder prediction 1 57 - -
Seca12g00195 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 131 IPR000504 GO:0003723
Seca12g00195 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 222 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00195 Seca-Chr12 1810233 1814319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00195 66 238 Eukaryotic Initiation Factors Gene Family AT4G34110 25.434 3.96e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00195 - - gmx:100796848 369.392