Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00195 | ATGCAGCCTGGCATGGCTCCACCGACCATGGCCCAACAGCCCAATCAACAATACCAACAACAGCAACAACCTTACATGATGATGCCGCCACAGCCTCAGCCTCCTCCGATGTGGGCCCCATCTGCCCAGCCTCCGGTTCAGTCGGTCCCTCCTCCACAATCGGTTCAACCTGCCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTACAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAAGGCGGCCGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCAAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGTGACTTGGCTGCGGATGTTACAGATTATCTTCTGCAGGACACATTTAGAACCCGGTATCCCTCAGTTAAGGGGGCCAAAGTTGTAATTGATAGGCTCACTGGCCGAACAAAGGGTTATGGTTTTGTTAGGTTCGGAGATGAGAGTGAACAAGTTAGGGCTATGACTGAAATGCAGGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCAATCAGTCAAAAGGGTGTCAAGAGGCTCTATCATCTCTGAGCCTGGAACTGATTTCAGCTGAAATGTTACCATTTTAG | 798 | 0.4787 | MQPGMAPPTMAQQPNQQYQQQQQPYMMMPPQPQPPPMWAPSAQPPVQSVPPPQSVQPASADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSKAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQDTFRTRYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGNQSKGCQEALSSLSLELISAEMLPF. | 266 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00195 | 265 | FunFam | Polyadenylate-binding protein RBP45C | 149 | 241 | - | - | |
Seca12g00195 | 265 | MobiDBLite | consensus disorder prediction | 27 | 52 | - | - | |
Seca12g00195 | 265 | CDD | RRM1_SECp43_like | 65 | 145 | - | - | |
Seca12g00195 | 265 | CDD | RRM2_SECp43_like | 156 | 235 | - | - | |
Seca12g00195 | 265 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 145 | IPR035979 | GO:0003676 | |
Seca12g00195 | 265 | SMART | rrm1_1 | 65 | 140 | IPR000504 | GO:0003723 | |
Seca12g00195 | 265 | SMART | rrm1_1 | 158 | 232 | IPR000504 | GO:0003723 | |
Seca12g00195 | 265 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Seca12g00195 | 265 | SUPERFAMILY | RNA-binding domain, RBD | 150 | 244 | IPR035979 | GO:0003676 | |
Seca12g00195 | 265 | Gene3D | - | 5 | 148 | IPR012677 | - | |
Seca12g00195 | 265 | Gene3D | - | 149 | 249 | IPR012677 | - | |
Seca12g00195 | 265 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 64 | 144 | IPR000504 | GO:0003723 | |
Seca12g00195 | 265 | FunFam | Polyadenylate-binding protein RBP45 | 7 | 148 | - | - | |
Seca12g00195 | 265 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 56 | 242 | - | - | |
Seca12g00195 | 265 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 157 | 236 | IPR000504 | GO:0003723 | |
Seca12g00195 | 265 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Seca12g00195 | 265 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 66 | 131 | IPR000504 | GO:0003723 | |
Seca12g00195 | 265 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 159 | 222 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00195 | Seca-Chr12 | 1810233 | 1814319 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00195 | 66 | 238 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.434 | 3.96e-14 | 70.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00195 | - | - | gmx:100796848 | 369.392 |