Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00194 ATGATGCAGCCTGGCATGCCTCCACCCACCATGGCTCAACAGTCCAACCAACAATACCAACAGCAGCAACAACCCTATATGATGATGCCGCCACAGCCTCAGCCTCCCCCGATGTGGGCCCCATCTGCCCAGCATCCGGTTCAGTCGGTCCATCCTCCACAATCGGTCCAACCTGCCAGCGCCGATGAGATCCGTACCCTATGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTATAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCTGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCTAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGTGACTTGGCTGCGGATGTTACAGATTATCTTCTTCAGGAAACATTTAGAACTCGGTTTCCCTCAGTTAAGGGGGCCAAAGTTGTGATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTGAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCTATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCACTCAGCCAAAAGGGTGTCAAGAGGCTCTGTCATCTCTGAGCCTGGAACTGGTTTCAGCTGAAATGGTTACCATTTTAGTGCATGGCCTTGCGTAG 819 0.4799 MMQPGMPPPTMAQQSNQQYQQQQQPYMMMPPQPQPPPMWAPSAQHPVQSVHPPQSVQPASADEIRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGTQPKGCQEALSSLSLELVSAEMVTILVHGLA. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00194 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Seca12g00194 272 Gene3D - 157 233 IPR012677 -
Seca12g00194 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Seca12g00194 272 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 54 243 - -
Seca12g00194 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Seca12g00194 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Seca12g00194 272 SMART rrm1_1 66 141 IPR000504 GO:0003723
Seca12g00194 272 SMART rrm1_1 159 233 IPR000504 GO:0003723
Seca12g00194 272 MobiDBLite consensus disorder prediction 1 56 - -
Seca12g00194 272 CDD RRM2_SECp43_like 157 236 - -
Seca12g00194 272 CDD RRM1_SECp43_like 66 146 - -
Seca12g00194 272 FunFam Polyadenylate-binding protein RBP45C 150 242 - -
Seca12g00194 272 SUPERFAMILY RNA-binding domain, RBD 152 245 IPR035979 GO:0003676
Seca12g00194 272 FunFam Polyadenylate-binding protein RBP45 8 149 - -
Seca12g00194 272 Gene3D - 7 153 IPR012677 -
Seca12g00194 272 MobiDBLite consensus disorder prediction 8 27 - -
Seca12g00194 272 MobiDBLite consensus disorder prediction 28 42 - -
Seca12g00194 272 SUPERFAMILY RNA-binding domain, RBD 26 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00194 Seca-Chr12 1798310 1800154 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00194 51 239 Eukaryotic Initiation Factors Gene Family AT4G34110 25.397 2.67e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00194 - - gmx:100796848 394.815