Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00194 | ATGATGCAGCCTGGCATGCCTCCACCCACCATGGCTCAACAGTCCAACCAACAATACCAACAGCAGCAACAACCCTATATGATGATGCCGCCACAGCCTCAGCCTCCCCCGATGTGGGCCCCATCTGCCCAGCATCCGGTTCAGTCGGTCCATCCTCCACAATCGGTCCAACCTGCCAGCGCCGATGAGATCCGTACCCTATGGATCGGCGATTTGCAGTACTGGATGGACGAGAATTATCTCTATAATTGTTTCGCTCACACCGGCGAGGTGGCCTCTGTTAAAGTAATTAGGAATAAACAAACTAGTCAATCAGAAGGTTATGGATTTCTTGAGTTTACTAGTAGGGCTGCTGCTGAGAGAATACTTCAAACATATAATGGCACCATTATGCCTAATGGTGGGCAGAACTTTAGATTGAACTGGGCAACTTTTAGTGCTGGTGAGAGGCGGCATGATGATAGTCCAGATTATACCATTTTTGTTGGTGACTTGGCTGCGGATGTTACAGATTATCTTCTTCAGGAAACATTTAGAACTCGGTTTCCCTCAGTTAAGGGGGCCAAAGTTGTGATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTGAGGTTTGGAGATGAGAGTGAACAAGTTAGGGCTATGACTGAAATGCAAGGGGTTCTCTGTTCAACAAGACCAATGCGTATTGGACCAGCCTCTAACAAAAACCCTGGCACTCAGCCAAAAGGGTGTCAAGAGGCTCTGTCATCTCTGAGCCTGGAACTGGTTTCAGCTGAAATGGTTACCATTTTAGTGCATGGCCTTGCGTAG | 819 | 0.4799 | MMQPGMPPPTMAQQSNQQYQQQQQPYMMMPPQPQPPPMWAPSAQHPVQSVHPPQSVQPASADEIRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTSQSEGYGFLEFTSRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRTRFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGTQPKGCQEALSSLSLELVSAEMVTILVHGLA. | 273 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00194 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 65 | 145 | IPR000504 | GO:0003723 | |
Seca12g00194 | 272 | Gene3D | - | 157 | 233 | IPR012677 | - | |
Seca12g00194 | 272 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 237 | IPR000504 | GO:0003723 | |
Seca12g00194 | 272 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 54 | 243 | - | - | |
Seca12g00194 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 67 | 132 | IPR000504 | GO:0003723 | |
Seca12g00194 | 272 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 223 | IPR000504 | GO:0003723 | |
Seca12g00194 | 272 | SMART | rrm1_1 | 66 | 141 | IPR000504 | GO:0003723 | |
Seca12g00194 | 272 | SMART | rrm1_1 | 159 | 233 | IPR000504 | GO:0003723 | |
Seca12g00194 | 272 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Seca12g00194 | 272 | CDD | RRM2_SECp43_like | 157 | 236 | - | - | |
Seca12g00194 | 272 | CDD | RRM1_SECp43_like | 66 | 146 | - | - | |
Seca12g00194 | 272 | FunFam | Polyadenylate-binding protein RBP45C | 150 | 242 | - | - | |
Seca12g00194 | 272 | SUPERFAMILY | RNA-binding domain, RBD | 152 | 245 | IPR035979 | GO:0003676 | |
Seca12g00194 | 272 | FunFam | Polyadenylate-binding protein RBP45 | 8 | 149 | - | - | |
Seca12g00194 | 272 | Gene3D | - | 7 | 153 | IPR012677 | - | |
Seca12g00194 | 272 | MobiDBLite | consensus disorder prediction | 8 | 27 | - | - | |
Seca12g00194 | 272 | MobiDBLite | consensus disorder prediction | 28 | 42 | - | - | |
Seca12g00194 | 272 | SUPERFAMILY | RNA-binding domain, RBD | 26 | 146 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00194 | Seca-Chr12 | 1798310 | 1800154 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00194 | 51 | 239 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.397 | 2.67e-13 | 67.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00194 | - | - | gmx:100796848 | 394.815 |