Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00193 ATGGAGAAAAGATTGGGGTTCGTGTTTAGCACTTTGGTTCTGTTGAAACTTCCCTGCAGGCTGGTTGTTTGTTATCATGTCATTTTTTATTTTCGTGAAGCTTATGCATCATATCAGAATCCTCAAGGGTCACAGAATGAGAATGATCCAAATAATACAACTATTTTTGTCGGCAATTTGGATCCTAATGTCACAGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGCTAGTTCATGTGAAGATTCCAGCCGGCAAGAGATGTGGGTTTGTCCAATTTACGGATAGGAGCTGTGCAGAGGAGGCTTTGCGGGTTTTAAATGGTACACTTTTGGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAGCAGACTCAATCAGATCCAAACCAATGGAATTCTAGTGGATATTATGGATATGCTCAGGGTTATGAAAACTATGGTTATGCTCCTTCTGGACAGGACCCCAATATGTATGGCGGTTATCCAGGGTATGCTCAGCAATAG 525 0.4229 MEKRLGFVFSTLVLLKLPCRLVVCYHVIFYFREAYASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFTDRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPNQWNSSGYYGYAQGYENYGYAPSGQDPNMYGGYPGYAQQ. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00193 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 118 IPR000504 GO:0003723
Seca12g00193 174 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 135 - -
Seca12g00193 174 SUPERFAMILY RNA-binding domain, RBD 35 149 IPR035979 GO:0003676
Seca12g00193 174 SMART rrm1_1 54 121 IPR000504 GO:0003723
Seca12g00193 174 Gene3D - 32 135 IPR012677 -
Seca12g00193 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 125 IPR000504 GO:0003723
Seca12g00193 174 FunFam Polyadenylate-binding protein RBP45C 32 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00193 Seca-Chr12 1796392 1797956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00193 32 132 Eukaryotic Initiation Factors Gene Family AT2G23350 30.841 1.42e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00193 - - aprc:113864230 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00193 12 1796392 1797956 Seca6g04473 6 112278806 112280186 PCT