Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00186 ATGGGCTGTCATGGTAGCAAGGAGAAAAAATCAAGGGCAGAGTATAGTGGGCATGGATCAGGCACAGGTGGTGGCGTTAATTACAATACTGTTCAACCATCTTCTGCTCAGGTTCAGACTTCAGCACCCAAGCCACAGCCACAGACACAGACACAGTCACAGGCTCCAATTGTCACCCCACAAAACCCAAAGCCTAGTGCCCAGAATGTGAAGGTAGACACAACCATATTGGGCAAACCATTTGAAGACATAAAAAAGTACTACACTTTGGGGAAAGAGTTGGGTAGAGGGCAATTTGGAATCACCTATCTGTGCACTGAGAATTCCACTGGCAACACTTATGCCTGCAAATCCATTTTGAAGAGAAAGCTTGTTTCCAAAGCTGATAAAGACGACATGAAGAGAGAGATTCAGATTATGCAGCATTTGTCTGGGCAACCCAACATTGTGGAATTTAAGGGTGCTTACGAGGACAGGTATTCGGTGCACCTTGTGATGGAACTCTGTGAAGGTGGTGAGCTTTTTGATCGAATCATTGCTCAGGGTCACTATTCTGAGAGAGCTGCTGCATCAATTTGCCGAGCCATTGTTAATGTTGTGCACATTTGCCATTTCATGGGTGTCTTGCATCGCGATCTAAAGCCTGAGAATTTCTTGCTTTCTAGCAAGGATGAAGGAGCAACGCTCAAGGCAACTGATTTTGGACTCTCTGTCTTCATTGAAGAAGGGAAGGTTTACCGTGATATGGTAGGCAGTGCCTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATATTGTATATTCTCCTGAGTGGTGTACCACCTTTCTGGGCTGAAACTGAAAAAGGAATATTTAACGCCATATTGGAAGGTGAAATTGACTTTGTAAGTGAACCGTGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAGGAAGATGCTGAATCAGGATCCAAAGAAGCGGATTACTTCTGCTCAAGTCCTTGAACACCCATGGATGAGAGAAGGTGGAGAGGCATCTGATCAACCAATTGACAGTGCAGTTCTATCTAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAAAAACTTGCATTGAAGGTTATTGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAACAATGTTTGCAAATATGGACACCGACAATAGTGGCACCATCACCTATGAAGAACTGAAGACAGGCTTGGCTCGAATTGGTTCGGGACTGTCTGAGGCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGAAATGGATCAATTGACTATATTGAATTCATCTCAGCTACAATGCACAGGCACAGACTTGAACGGGATGAACATCTTTTCAAAGCATTCAAGTATTTTGATAAGGACAACAGTGGGTACATTACTAGAGATGAATTGGAGACTGCCATGACACAGCATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATTTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGCCACACCAGGGACAGCTATTTTAG 1611 0.4308 MGCHGSKEKKSRAEYSGHGSGTGGGVNYNTVQPSSAQVQTSAPKPQPQTQTQSQAPIVTPQNPKPSAQNVKVDTTILGKPFEDIKKYYTLGKELGRGQFGITYLCTENSTGNTYACKSILKRKLVSKADKDDMKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLVMELCEGGELFDRIIAQGHYSERAAASICRAIVNVVHICHFMGVLHRDLKPENFLLSSKDEGATLKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISDSAKDLVRKMLNQDPKKRITSAQVLEHPWMREGGEASDQPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKTMFANMDTDNSGTITYEELKTGLARIGSGLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLFKAFKYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPHQGQLF. 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00186 536 MobiDBLite consensus disorder prediction 1 15 - -
Seca12g00186 536 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Seca12g00186 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 521 - -
Seca12g00186 536 CDD STKc_CAMK 88 345 - -
Seca12g00186 536 CDD EFh 465 526 IPR002048 GO:0005509
Seca12g00186 536 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00186 536 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00186 536 Gene3D Transferase(Phosphotransferase) domain 1 174 353 - -
Seca12g00186 536 MobiDBLite consensus disorder prediction 1 71 - -
Seca12g00186 536 SUPERFAMILY Protein kinase-like (PK-like) 86 355 IPR011009 -
Seca12g00186 536 SUPERFAMILY EF-hand 385 525 IPR011992 -
Seca12g00186 536 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Seca12g00186 536 MobiDBLite consensus disorder prediction 22 71 - -
Seca12g00186 536 FunFam Calcium-dependent protein kinase 1 90 173 - -
Seca12g00186 536 SMART efh_1 429 457 IPR002048 GO:0005509
Seca12g00186 536 SMART efh_1 393 421 IPR002048 GO:0005509
Seca12g00186 536 SMART efh_1 500 528 IPR002048 GO:0005509
Seca12g00186 536 SMART efh_1 465 493 IPR002048 GO:0005509
Seca12g00186 536 Gene3D Phosphorylase Kinase; domain 1 90 173 - -
Seca12g00186 536 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00186 536 FunFam calcium-dependent protein kinase 1 174 353 - -
Seca12g00186 536 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Seca12g00186 536 Pfam EF-hand domain pair 464 526 IPR002048 GO:0005509
Seca12g00186 536 ProSitePatterns Protein kinases ATP-binding region signature. 94 121 IPR017441 GO:0005524
Seca12g00186 536 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Seca12g00186 536 ProSiteProfiles EF-hand calcium-binding domain profile. 497 531 IPR002048 GO:0005509
Seca12g00186 536 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Seca12g00186 536 FunFam Calcium-dependent protein kinase 1 354 529 - -
Seca12g00186 536 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Seca12g00186 536 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Seca12g00186 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Seca12g00186 536 Gene3D - 354 528 - -
Seca12g00186 536 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00186 Seca-Chr12 1741609 1747428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00186 1 536 EF-hand Containing Proteins AT4G04720 76.340 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca12g00186 Pkinase 2.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00186 K13412 - gmx:100816859 925.62