Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00175 ATGGCTGACTTGTTGGAATGGCCAAAGAAAGATAACCGCCGCTTGCTTCACGTCGTCTATCGAGTTGGTGACCTTGATCGCACCATCAAGTTTTATACTGAATGTCTTGGAATGAAGCTTTTGAGGCAAAGAGATGTTCCTGATGAGAAATACGCCAATGCTTTTCTTGGATTTGGCCCTGAACAATCTCATTTTGTTGTCGAATTGACATATAATTATGGGGTGACCTCGTATGACATTGGAGATGGCTTTGGACATTTTGCAATTGCAACTCAAGATATCTACAAATTGGTTGAACACATCCGGGGCAAGGGTGGAAACATCACAAGGGAGCCTGGTCCAGTTCAGGGAGGGACAACTGTTATTGCCTTTGTGAAGGATCCTGATGGCTACACTTTTGGACTCATCCAAAGACCAATAGTTCATGACCCATTTTGTCAAGTGATGCTTCGTGTTGGTGATTTAGAGCGCGCAATTAAGTTTTATGAAAAGGCTTTGGGCTTGAAGGTGTTGAGGAAGGTTGATAAGCCTGAGAACAAGTACACTGTAGCTATTCTTGGGTATGGAGAGGAGCACGAAACAACTGTTTTGGAGTTGACATATAATTATGGAGTCACTGAATACTCTAAGGGAAATGCTTACGCACAGATTGCTATTGGAACTGATGATGTATACAAAAGCGCTGAGGTAGTTGACCTAGTCACAAAAGAGCTGGGAGGGAAGATTACTCGGCAACCAGGGCCAATTTCTGGCCTTAACACAAAAATCACTTCCTTTTTAGATCCAGATGGATGGAAAACTGTCTTGGTTGACAATGAAGATTTCCTAAAGGAACTGCAGTGA 843 0.4282 MADLLEWPKKDNRRLLHVVYRVGDLDRTIKFYTECLGMKLLRQRDVPDEKYANAFLGFGPEQSHFVVELTYNYGVTSYDIGDGFGHFAIATQDIYKLVEHIRGKGGNITREPGPVQGGTTVIAFVKDPDGYTFGLIQRPIVHDPFCQVMLRVGDLERAIKFYEKALGLKVLRKVDKPENKYTVAILGYGEEHETTVLELTYNYGVTEYSKGNAYAQIAIGTDDVYKSAEVVDLVTKELGGKITRQPGPISGLNTKITSFLDPDGWKTVLVDNEDFLKELQ. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00175 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 144 272 IPR037523 -
Seca12g00175 280 CDD GlxI_Ni 15 136 - -
Seca12g00175 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 14 138 IPR037523 -
Seca12g00175 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 13 139 IPR029068 -
Seca12g00175 280 ProSitePatterns Glyoxalase I signature 1. 17 38 IPR018146 GO:0004462|GO:0046872
Seca12g00175 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 147 266 IPR004360 -
Seca12g00175 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 133 IPR004360 -
Seca12g00175 280 Gene3D - 1 138 IPR029068 -
Seca12g00175 280 NCBIfam lactoylglutathione lyase 14 138 IPR004361 GO:0004462|GO:0046872
Seca12g00175 280 PANTHER LACTOYLGLUTATHIONE LYASE 3 280 - -
Seca12g00175 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 145 271 IPR029068 -
Seca12g00175 280 Gene3D - 141 280 IPR029068 -
Seca12g00175 280 ProSitePatterns Glyoxalase I signature 1. 147 168 IPR018146 GO:0004462|GO:0046872
Seca12g00175 280 FunFam Lactoylglutathione lyase 141 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00175 Seca-Chr12 1601513 1604302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00175 147 271 Calmodulin-binding Proteins AT1G08110 28.667 1.05e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00175 K01759 - gmx:100793089 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00175 12 1601513 1604302 Seca12g00175 12 1601513 1604302 ECH
Seca6g04451 6 112073037 112080906 Seca12g00175 12 1601513 1604302 ECH
Seca12g00175 12 1601513 1604302 Seca6g04451 6 112073037 112080906 PCT