Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00162 ATGAGCTCTCATTCCCTTTGTCACCTCAACCTCATAAGCATGACCACCTCAACCTCACTACTCCTCTTGCTCTCATGCATCTTATTACACCAACATGCTTTAAGCTTGGTTAATGCCTCTTCCTACTACAGCACCACTTCTCAATCCATTTCCAAGACCAAGAAAGCATTTTTCAACGAGATAGACTCTTGCTGGCGGGCCAATTCAAATTGGGCATCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGTTTTGGCAAAGATGCCATTGGAGGCAAGTATGGGCCAATATATGTAGTCACAGATCCCTCTGATGACCCTGCAAACCCAAAACCAGGCACACTTCGTTATGGGGCAATCCAAAGTAAGCCCCTTTGGATCATTTTTGAGAGGAACATGGTTATAACACTAGAGAATGAGCTTATAATGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAAAGTGGAGATTGCAAATGGGCCTTGTATTACAATACAAGGTGTTAGCCATGTTATTATACATGGCATTAGCATCCATGATTGTAAGCCAAGCAAGGCTGGCCTTGTGAGGAGTACTCCTGACCATGTTGGCCATCGTAGAGGCTCTGATGGAGATGCTATTAGTATTTTTTCTTCCTCAAATGTTTGGATTGATCATTGCTTTTTGGCTCGTTGTGCTGATGGCCTAATTGATATTATTCATGCCTCAACTGCCATTACAGTTTCTAACAATTACTTAACCCAGCATGACAAAGTTATGTTGCTAGGACACAATGACCAATACACAGCAGATAAAATCATGAGAGTTACAATTGCCTTCAACAGGTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCTCATGTGGTCAACAACAAATATGATGAATGGAGAATGTATGCTATAGGTGGTAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATATAGCACCAAATAACCCAAGTGCAAAACAGATTACCAAGAGGGAAGTGAAGGAAAAGTGGAACGGTTGGAAATGGAGGTCTTCTAAGGATGTATTCTTGAATGGTGCTTATTTTGTACCATCTGGGTATGGAAGTTGTGCCCCAAATTATTCTCCTTCCCAATCTTTTGCAGTTGTTCCAGCGTACATGGTGCCTGCAATAACTCTCAATGCCGGTCCCTTGAATTGTGTTGTTGGGAAAGCATGTTAG 1218 0.422 MSSHSLCHLNLISMTTSTSLLLLLSCILLHQHALSLVNASSYYSTTSQSISKTKKAFFNEIDSCWRANSNWASNRQALADCAIGFGKDAIGGKYGPIYVVTDPSDDPANPKPGTLRYGAIQSKPLWIIFERNMVITLENELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPDHVGHRRGSDGDAISIFSSSNVWIDHCFLARCADGLIDIIHASTAITVSNNYLTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNKYDEWRMYAIGGSANPTILSEGNFYIAPNNPSAKQITKREVKEKWNGWKWRSSKDVFLNGAYFVPSGYGSCAPNYSPSQSFAVVPAYMVPAITLNAGPLNCVVGKAC. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00162 405 Pfam Pectate lyase 142 323 IPR002022 -
Seca12g00162 405 Gene3D - 58 398 IPR012334 -
Seca12g00162 405 PANTHER PECTATE LYASE 18-RELATED 41 403 IPR045032 GO:0030570
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Seca12g00162 405 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Seca12g00162 405 SMART amb_all 132 329 IPR002022 -
Seca12g00162 405 SUPERFAMILY Pectin lyase-like 57 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00162 Seca-Chr12 1513945 1515637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00162 19 405 Polysaccharide Lyase AT1G11920 66.753 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00162 K01728 - gmx:100807483 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00162 12 1513945 1515637 Seca12g00162 12 1513945 1515637 ECH
Seca12g00162 12 1513945 1515637 Seca12g00162 12 1513945 1515637 PCT