Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00156 ATGGAGGTTGTAGTTTCAAGACAAGAACAATCAAATCAACATGCTGAGGATAAGCTGCAGTTCTCCAGATGCTCAAAAGCTTTTGGAACTTCAAAGAGAAAGGCTGAGGAAATTAATGAGTATGATGGTAATAAGAAACCAGAACCAGAAGAGGAAGAAGAAACTATGGAATGTTTAAAGAAGATCACTCCAGTAGGAATGGAGGCTACAGTTGCACAACGAGGACAGTCAAATCAGCATACTAACAATAATCCAGACAAAGTCTCAAAATGCTCAAAAGCTTTTGAAATTTCAAAAAGGAAAAAGGTCCAAGGAATTCATAAACATACAAAACCAAATTCAGAAATGAAACAAGACCTTCTGCTATGTTCGAAGAGAACCCCCAAACTTCCATCTAGGAAAGGAGAAGAGCCAAAGAAGCTTACTGCCTCAAACAAGAAAAGGAAATTTGAAGATGATCCCATGATTGACAATTTTGAAGAAGATGAAGAAACACTTTTTCTTTTAAAGGCAAAGACCAGGAGCAGAGCTAGCAGAATGGATAACGTGATGGGTGTTCAACAAAATCCTCGGATGTGTCATCAGTGCTTGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCCAAAAATGTACTGTTTGCGATGCATCAATCAATGGTACCCAGATATGTTGATAGAAGAAATTGCTCAAAGCTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGTTTGCTTGCATTCAAGAGGATTGATTAAGACATCTAACTGGGACATCACCAATTATGAAAAAGCTCAGTATCTGCAATATATGATTAATTTACTCCTTCCATATCTGAAACAAATTTGTCATGAACAAAGTCAAGAGGAAGAGATTGAAGTTAAAATACAAGGAAAATCTCCTTGTGAGATTGAGATACCGCAAAGTCTTTGTGTTGACAATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTATTGACCTTCATCGAAGCTGCCCCAAGTGTTCCTATGAACTCTGCCTTAGTTGTTGCCAAGAAATACGCAATGGAAGCATTACACCCCGGGATGAGATGAAGTTCCAATATGTGAATAGGGGTTATGATTATATGCATGGCGGTGACCCGCTCCCAATGTCTTATGATTTGGAGACATCAGATGGTCATATTGAGCTATCCACTGAGTGGAATGCCAAGAATGATGGAAGTGTTAGTTGTGGTCCAGAGAAGATGGGGGGTTGTGGTGGCTCTGTACTGGAGCTGAGGCGCATCCTGCCACGTGGGTGGATATCTGACTTGGAAGCCAAAGCTCGCAATATGCTGAAAATTTATGAAATGGAACATAGAACTCTTCAGCAGAAAGAAGTGGTATCAAGCTACAGCACTATGAAAAATGCAGCGTTTGGAGAAGCCACAAATGACAATAACATATACTGTCCAGACTTAAAAGAGGGGCTGTTGCTTTTCCAAAAGCACTGGACTAATGGTGAACCAATTATAGTTCGTGATGTTCTTGAACAGGGAACAGGTCTGAGTTGGGAGCCAATGGTCATGTGGCGAGTATTATGTGAAAATACCGTTTCAGAAATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATTAATACACATAAGTTTTTTAAAGGTTATATAGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCATCTGATAAATTTGAAGATCTTCTGCCCCGCCACTGTGATGAGTTTATTCGCTCCTTGCCATTCCAAGAGTATACTGATCCTCGGGGTGGAATTCTTAATCTCGCAGTAAAGTTGCCAGCCCATGTCCTTAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAACTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGACATGTCTGATGCGGTGAATATTTTGACCCATACAGCTGAGGTGATGTTAACTGATGAGCAGCACTCGATTATTCCAAAGTTGAAAGAAGCGCACAAGGCACAAGATGAGAGAGAACTCTGCCCTCAAGAGAGGGTTGCTGAATGGCTGAATGGTCGACCTTGCAAAGACAACATAGAAAAGATAGAGAATAAGGAAGTCTTAGAACCCAATGATATGGAGAAGCGCCCTATTGAAATTAATGGAAAGATCTTTCGAAATAGTGTGTCCGAAGGGGCTACTTTTCCTGCTATTTCTACAGAAAATGAATCAATGGAAACAGGTTGTGCCCTATGGGATATATTTCGGAGAGAGGATACTGAAAAATTAGAGACATATCTAAGAACGCACTCAAAAGAATTTAGACATACTTACTGTTCTCCAGTTGAACAGGTTGTGCATCCAATTCATGACCAATGTTTTTATTTGACTTCTGAGCACAAGAGGAAGCTGAAGGAGGAATTTGGTGTAGAACCCTGGACTTTTGAGCAGAAACTTGGGGAGGCAGTAGTTATTCCTGCCGGATGCCCACATCAAGTCAGAAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTCCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTCCCCAGGAACCACAAGGCTAGAGAAGATAAACTAGAGATAAAGAAGATGATAGTTTATGCCATCGATCAAGCTGTCAAAGACTTAAAAGCTTTATTTGAGTGCTCTTGA 2745 0.4051 MEVVVSRQEQSNQHAEDKLQFSRCSKAFGTSKRKAEEINEYDGNKKPEPEEEEETMECLKKITPVGMEATVAQRGQSNQHTNNNPDKVSKCSKAFEISKRKKVQGIHKHTKPNSEMKQDLLLCSKRTPKLPSRKGEEPKKLTASNKKRKFEDDPMIDNFEEDEETLFLLKAKTRSRASRMDNVMGVQQNPRMCHQCLKKERTAFVPCTKCPKMYCLRCINQWYPDMLIEEIAQSCPFCRKNCNCNVCLHSRGLIKTSNWDITNYEKAQYLQYMINLLLPYLKQICHEQSQEEEIEVKIQGKSPCEIEIPQSLCVDNERVYCDHCATSIIDLHRSCPKCSYELCLSCCQEIRNGSITPRDEMKFQYVNRGYDYMHGGDPLPMSYDLETSDGHIELSTEWNAKNDGSVSCGPEKMGGCGGSVLELRRILPRGWISDLEAKARNMLKIYEMEHRTLQQKEVVSSYSTMKNAAFGEATNDNNIYCPDLKEGLLLFQKHWTNGEPIIVRDVLEQGTGLSWEPMVMWRVLCENTVSEISSKMSEVKAIDCLANCEVEINTHKFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRGGILNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHSIIPKLKEAHKAQDERELCPQERVAEWLNGRPCKDNIEKIENKEVLEPNDMEKRPIEINGKIFRNSVSEGATFPAISTENESMETGCALWDIFRREDTEKLETYLRTHSKEFRHTYCSPVEQVVHPIHDQCFYLTSEHKRKLKEEFGVEPWTFEQKLGEAVVIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTNEFRQLPRNHKAREDKLEIKKMIVYAIDQAVKDLKALFECS. 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00156 914 SUPERFAMILY Clavaminate synthase-like 490 908 - -
Seca12g00156 914 Gene3D Cupin 478 886 - -
Seca12g00156 914 MobiDBLite consensus disorder prediction 129 147 - -
Seca12g00156 914 Pfam JmjC domain, hydroxylase 757 860 IPR003347 -
Seca12g00156 914 MobiDBLite consensus disorder prediction 126 147 - -
Seca12g00156 914 ProSiteProfiles Zinc finger RING-type profile. 193 239 IPR001841 -
Seca12g00156 914 ProSiteProfiles JmjC domain profile. 609 877 IPR003347 -
Seca12g00156 914 SMART cupin_9 590 877 IPR003347 -
Seca12g00156 914 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 30 910 IPR045109 GO:0032454|GO:0033169
Seca12g00156 914 MobiDBLite consensus disorder prediction 30 55 - -
Seca12g00156 914 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 189 258 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00156 Seca-Chr12 1483026 1489216 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca12g00156 JmjC 9.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00156 K15601 K21989 gmx:100797860 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00156 12 1483026 1489216 Seca12g00156 12 1483026 1489216 ECH
Seca12g00156 12 1483026 1489216 Seca6g04428 6 111870421 111875665 PCT