Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00154 ATGGCTCACACCCGCTTTGCTTTTTCTCTCCTTTTCTCTTTCATCTTTGCTGCTCTCGCCAATACTGACCCTTCTGATGTTCAAGCACTTGAGGTCATGTACAACTCGTTGAATAGTCCATCTCACCTAACGGGTTGGAAAATCGGTGGTGGTGATCCATGTGGAGAGTCATGGAACGGGGTGACATGTGAGAGTTCAGCCGTTGTTTCCATTGAGCTATCCGGTTTAGGACTCAATGGTACATTGGGGTACCTACTTTCAGACTTTATGTCACTGAAAAAGCTTGACTTGAGTGACAACAATATCCATGACGCAATTCCCTACCAGTTGCCGCCAAATCTTGCAAGCTTGAATCTAGCAAGCAATAACTTAAGTGGAAATCTTCCTTATTCCATTTCAACAATGGTTTCCCTTAATTATCTGAATGTTAGCCACAATGCACTTTCCCTGTCAATTGGAGACATTTTTCCTAATCATTCTGATCTTGGGATCCTGGATCTATCATTCAATAACTTCTCTGGGGATCTTCCTGGTTCACTTGGTGCATTGTCTAATCTTTCTTCTCTCTTCTTGCAGAACAATCAGTTGACTGGCTCTCTTAATAATCTTGTCGGTTTGCCTTTGGATACTTTAAATGTTGCAAACAATCATTTCAATGGATGGATACCTCATGAGCTTAATTCAGTCCATAATTTTATATATGGTGGAAATTCTTTTAACAACAGCCCTGCTCCTCCTTCACCACCATTTACAGCGCCTGCACCTGGAAGATCTGATGACAATAATATTAATAATCACGGTTCTTCATCCAGTTCACATAATAAAATCCTTGGTTCTGATCATGAAAGTTCCGAGGGCCATAAGGGTTTGACAGCTGGAGTCATTGTTGGAATTATTTTAGGTTTAGTGTTTGTTGCTGTCATTGTGCTACTTGCTCTTGTTTTCTGTATCCAAAAGCAAAAAATGAAGGAGAAAGGTCCAAGAACATTTAGTGGGAGTCTTCCTCTTGGAATTGTTAATGAGACTCCTCAGATGCAAGAACAAAGGGTAAAAAGTGCTGTTGTTATTACAGATCTGAAGCCTCCTCCTGCAGACAAAGTGATGGTTGAGAGAATACCTGCAAAAGATGGATCTGTAAAGCAAATGAAGCCCCCTATAACTGCTACATCATACACAGTTTCTGCTCTCCAAAGTTCAACAAATAGCTTTAGTCAAGAATTTCTTGTTGGTGAAGGTTCTCTTGGTCGAGTTTACAAGGCTGATTTCCCAAATGGGATGATCATGGCCATCAAGAAGATAGACAACACGACACTATCATTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATCTCACACTTGAGACACCCAAACATTGTTGTGCTAACAGGATATTGTGCAGAGCATGGGCAACGTCTTCTAGTTTATGAGTATGTAGGAAATGGAAATCTGCATGACATGCTCCATTTTGCTGAAGATAGCAGTAAGGCTTTATCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCTCGAGCTTTAGAGTACTTGCATGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTCGAGCCTCACCTGTCAGACTGTGGTTTGGCTGCTCTAACCTCAAAAACTGAGCGACAGGTTTCAACTCAAATGGTCGGTTCATTTGGTTATAGTGCTCCAGAGTTTGCATTATCCGGAATTTACACTGTAAAAAGTGATGTTTACAGCTTTGGAGTGGTTATGTTGGAGCTATTGACTGGTCGTAAGCCGCTTGACAGTTCACGGGTTAGATCAGAGCAGTCACTTGTAAGGTGGGCTACTCCCCAGCTCCATGATATAGATGCCTTGGCCAAAATGGTTGATCCTGCTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCATTGCTGATATCATTGCCCTCTGTGTTCAGCCTGAACCTGAATTTCGACCTCCCATGTCTGAGGTGGTGCAAGCATTGATACGGTTAGTGCAAAGAGCAAATGTGGTTAAACGGCGTCCCAGTGATGAATCTAGTTTCGGTCACAGAACCCCAGATTATGAGGCCACAGACATGTTATATTAG 2136 0.4204 MAHTRFAFSLLFSFIFAALANTDPSDVQALEVMYNSLNSPSHLTGWKIGGGDPCGESWNGVTCESSAVVSIELSGLGLNGTLGYLLSDFMSLKKLDLSDNNIHDAIPYQLPPNLASLNLASNNLSGNLPYSISTMVSLNYLNVSHNALSLSIGDIFPNHSDLGILDLSFNNFSGDLPGSLGALSNLSSLFLQNNQLTGSLNNLVGLPLDTLNVANNHFNGWIPHELNSVHNFIYGGNSFNNSPAPPSPPFTAPAPGRSDDNNINNHGSSSSSHNKILGSDHESSEGHKGLTAGVIVGIILGLVFVAVIVLLALVFCIQKQKMKEKGPRTFSGSLPLGIVNETPQMQEQRVKSAVVITDLKPPPADKVMVERIPAKDGSVKQMKPPITATSYTVSALQSSTNSFSQEFLVGEGSLGRVYKADFPNGMIMAIKKIDNTTLSLQEEDNFLEAVSNISHLRHPNIVVLTGYCAEHGQRLLVYEYVGNGNLHDMLHFAEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELEPHLSDCGLAALTSKTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRIADIIALCVQPEPEFRPPMSEVVQALIRLVQRANVVKRRPSDESSFGHRTPDYEATDMLY. 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00154 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 680 IPR046959 -
Seca12g00154 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00154 711 Gene3D Phosphorylase Kinase; domain 1 367 480 - -
Seca12g00154 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 369 480 - -
Seca12g00154 711 Gene3D Transferase(Phosphotransferase) domain 1 481 690 - -
Seca12g00154 711 MobiDBLite consensus disorder prediction 691 711 - -
Seca12g00154 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Seca12g00154 711 Gene3D Ribonuclease Inhibitor 23 292 IPR032675 -
Seca12g00154 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 23 250 - -
Seca12g00154 711 MobiDBLite consensus disorder prediction 257 277 - -
Seca12g00154 711 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Seca12g00154 711 ProSiteProfiles Leucine-rich repeat profile. 185 207 IPR001611 GO:0005515
Seca12g00154 711 Pfam Leucine rich repeat 91 148 IPR001611 GO:0005515
Seca12g00154 711 SUPERFAMILY Protein kinase-like (PK-like) 382 677 IPR011009 -
Seca12g00154 711 SUPERFAMILY L domain-like 22 231 - -
Seca12g00154 711 Pfam Protein tyrosine and serine/threonine kinase 409 677 IPR001245 GO:0004672|GO:0006468
Seca12g00154 711 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Seca12g00154 711 MobiDBLite consensus disorder prediction 243 283 - -
Seca12g00154 711 CDD STKc_IRAK 409 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00154 Seca-Chr12 1452859 1458139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00154 135 711 Strubbelig Receptor Gene Family AT4G22130 68.512 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca12g00154 PK_Tyr_Ser-Thr 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00154 - - gmx:100781455 1063.14