Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00150 ATGATGCCTTCATTAGTGACATGTAATCATCATCCAAACATTACTCTCTTCCTTCCCAATCCTAATCCCATGCCTTGCATTACTAATAATAATAACCCCATCATGCTACACAACAGCACTGGATTAGGGCATTTGATGGAGATCGACCACAACAACAACAACGATGGGAGCTCTTCTTCTTCTTCATCCGCCTTGAAGGCCAAGATCATGGCCCATCCTCACTATCACCGCCTGTTGACAGCCTGCGTCAATTGTCAAAAGATTGGGGCTCCGGCTGAAGCATGTGCATGTGCAGCAGGCTCAGAGAATTCCATGGGTGAGGATCCGGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTCATCAAGTACGAGCAACAGCTCTCTAAACCCTTCCATGAAGCCATGCTTTTTCTTCTTCCGATTTTTTATTGCATTTTACCAAAAAGCAGAATGACTACTTGTAATGAAGCTAGTGATAGGAATGGATCATCTGAAGATGTTGATGTACACAACAACATAATAGATCCCCAGGCAGAGGACCAAGAACTGAAGGTTCAGCTTCTACGCAAGTACAGTGGATATCTAGGCAGTTTGAAGCATGAATTCATGAAGAAGAAGAAAAAAGGCAAGCTGCCTAAAGAAGCAAGACACAAATTGCTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCTGAGGACATGCAGTTTGTGGTTGTGGATCCAAGCCATCCACACTACTATATGGACAATGTTCTGGGCAATCCGTTTCCCATGGATCTCTCCCACACAATGCTCTGA 909 0.4444 MMPSLVTCNHHPNITLFLPNPNPMPCITNNNNPIMLHNSTGLGHLMEIDHNNNNDGSSSSSSSALKAKIMAHPHYHRLLTACVNCQKIGAPAEACACAAGSENSMGEDPALDQFMEAYCEMLIKYEQQLSKPFHEAMLFLLPIFYCILPKSRMTTCNEASDRNGSSEDVDVHNNIIDPQAEDQELKVQLLRKYSGYLGSLKHEFMKKKKKGKLPKEARHKLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDNVLGNPFPMDLSHTML. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00150 302 SMART ELK_2 184 205 IPR005539 GO:0003677
Seca12g00150 302 Pfam KNOX1 domain 64 94 IPR005540 GO:0003677|GO:0005634
Seca12g00150 302 SMART KNOX2_2 101 147 IPR005541 GO:0003677|GO:0005634
Seca12g00150 302 FunFam Homeobox protein knotted-1-like 2 209 271 - -
Seca12g00150 302 CDD homeodomain 216 268 IPR001356 GO:0003677
Seca12g00150 302 ProSiteProfiles ELK domain profile. 184 204 IPR005539 GO:0003677
Seca12g00150 302 SUPERFAMILY Homeodomain-like 206 282 IPR009057 -
Seca12g00150 302 ProSiteProfiles 'Homeobox' domain profile. 204 267 IPR001356 GO:0003677
Seca12g00150 302 SMART KNOX1_2 63 103 IPR005540 GO:0003677|GO:0005634
Seca12g00150 302 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 273 - -
Seca12g00150 302 SMART HOX_1 206 271 IPR001356 GO:0003677
Seca12g00150 302 Gene3D - 202 273 - -
Seca12g00150 302 Pfam Homeobox KN domain 224 263 IPR008422 GO:0003677|GO:0006355
Seca12g00150 302 Pfam KNOX2 domain 105 140 IPR005541 GO:0003677|GO:0005634
Seca12g00150 302 ProSitePatterns 'Homeobox' domain signature. 242 265 IPR017970 GO:0000981|GO:0006355
Seca12g00150 302 Pfam ELK domain 184 205 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00150 Seca-Chr12 1428142 1430053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00150 45 302 Homeobox Transcription Factor Family AT1G62360 65.972 2.27e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca12g00150 Homeobox_KN 4.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00150 - - gmx:100127401 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00150 12 1428142 1430053 Seca6g04423 6 111816123 111822322 PCT