Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00146 ATGAGAGCCTCACAGCATCAGCCCCAACAGAGAGGATGCAGGGCATTGTGTTGCAGTTGCAGGTTTAGTGTTTCATCCTCAGAGAGCTCTGCCTCTGATAGGTTCCCTTCAGTTTCTAGCTTAGCACATGCCATGGTGCAAGAGAGACTTGACCAAATGATAAGAGAAAAGACGGAAGCTAGACATGTTGTAGAGAGAAGAAGGCAACAAAGCAGAGACAGAGAAGGAACCAAGTTCGTTGTAATGGTTGCAATGGAGAAGTGCTCTTATGATCCGAGAGAGGATTTTAAGGAGTCCATGATGGAGATGATAACTGCAAACCGCCTTCAAGAAGCGAAAGATCTTCGTAATCTATTGAACTATTATATCTCCATGAACTCCAACAAGTACCATAGTCTTATACTTGAGGTTTTTCATGAGGAATCGCTGCGCACTGAAAGGGAAGCAGGAACCATTCTCGGTTTGTTAACGGAACAAATGGATGGTGTGGATAGAGAGCAACGGAGGAGGCGCACTCTCAAAGAACGCTTCAGATTCGCCGGAATCGGGTGTTGTGGGGCCACCTGGGTTTTCCGTCCAGTCAGGCACGAACAACAACAAGATGAAGAAGAAGGAAGAGGAACGCAGCAGGAGCATGAGCATGAGCAACGACTCCAGGGTCAAGATCCAGACCCGCTCTTACCCGAATGTGTGGGTCCGGGTCCGTCGGGATCGGGTATGAATCTGGCGGCGGCGTTGGCGGCGGAGCGTCAATTCCGGGGATCGCATGAAGCGCGGCTGTTAGAGGAAACGGAAGTGGAAACGGAGAAAGAAATTAGAGGAGAGGTGGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGAGCGGCGTTCATCCCATGTGGGCACACTTTCTGTAGGGTGTGTTCGAGGGAGCTGTGGCTGAACCGAGGAACGTGTCCCCTTTGTAATCGTTCCATTCTCGAGATTCTCGATATCTTCTGA 996 0.502 MRASQHQPQQRGCRALCCSCRFSVSSSESSASDRFPSVSSLAHAMVQERLDQMIREKTEARHVVERRRQQSRDREGTKFVVMVAMEKCSYDPREDFKESMMEMITANRLQEAKDLRNLLNYYISMNSNKYHSLILEVFHEESLRTEREAGTILGLLTEQMDGVDREQRRRRTLKERFRFAGIGCCGATWVFRPVRHEQQQDEEEGRGTQQEHEHEQRLQGQDPDPLLPECVGPGPSGSGMNLAAALAAERQFRGSHEARLLEETEVETEKEIRGEVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIF. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00146 331 CDD RING-HC 283 320 - -
Seca12g00146 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 330 IPR013083 -
Seca12g00146 331 MobiDBLite consensus disorder prediction 197 220 - -
Seca12g00146 331 ProSiteProfiles OVATE domain profile. 85 144 IPR006458 -
Seca12g00146 331 MobiDBLite consensus disorder prediction 197 233 - -
Seca12g00146 331 PANTHER OS01G0917900 PROTEIN 142 331 - -
Seca12g00146 331 Pfam Transcriptional repressor, ovate 89 140 IPR006458 -
Seca12g00146 331 ProSiteProfiles Zinc finger RING-type profile. 283 321 IPR001841 -
Seca12g00146 331 NCBIfam uncharacterized plant-specific domain TIGR01568 83 140 IPR006458 -
Seca12g00146 331 Pfam Zinc finger, C3HC4 type (RING finger) 280 325 - -
Seca12g00146 331 SMART ring_2 283 320 IPR001841 -
Seca12g00146 331 SUPERFAMILY RING/U-box 275 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00146 Seca-Chr12 1363988 1374121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00146 152 331 C3H Transcription Factor Family AT4G22250 53.202 4.26e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca12g00146 Ovate 1.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00146 - - gmx:100792613 250.751