Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00144 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCAGTTGATAATTCAGGTTCTGCCCCAACGGCAAATGGTGGGGTTGAGTTGGATTCGTCAATCTTTTTGAAGAAAGCACATGAGCTGAAAGAAGAAGGGAATAAGAGATTTCAGAATAAGGACTATGGGGGTGCTCTTGAACAATATGAGAATGCCCTTCGACTAATCCCCAAAACACACCCTGATAGAGCGGTTTTCCACAGCAATAAGGCCGCATGTTTGATGCAAATGAAGCCCATAGATTATGAAGCTGTGATTTCTGAGTGCACCATGGCACTTCAGGTCCAGCCCCGATTTGTCCGTGCTCTTCTTCGGAGAGCACGGGCTTTTGAGGCTGTGGGGAAGTATGAAATGGCTGTTCAAGATGTTCAGTTCTTATTGGGAGCTGACCCTAATCACCGAGATGCTTTGGAGATTGCCCAGAGATTGAGGACTGCATTGGGACCTCGCCAGGAAGCCCAGCAGGACCTCCACAGTCGCCCTTCTCCTGCTGCCCTTGGTGCTTCTGCGGTACGAGGTGCACCTATTGCTGGATTGGGGCCATGTTTGCCAGCCCGGCCAGTACCAAAGAAGGGAGCAAATTCAGCAGTTCCTAATAACAAACTAGACAAGTCCCAACCAGTTTTACCTACTGAAAATGGTCCAGAGACTAAGTCCCAGTTGCCAAAACTTGTCTTGAAGCCTTCAAATGGTTCTGTAAAGCCACCTAATCTGAAAAATGAAAACCAGAAGGAACAGTCATCTCATTCATCAACTATTCATGGCCACCATTCAGAAGTCACGATTCGATGGAGGCCATTGAAGCTTGTTTATGATCATGACATTAGGCTTTCCCAGATGCCTGTGAATTGCACTTTTAGAGTGCTAAGAGATATAGTAAGCAAAAGATTTCCTTCATCAAGTTCCGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGATTACTATAACCTCTACTAATGAACTCAGATTGGCAGAATCTACTGTTGATAGCCATCTCCTTAAAGATCCTGAAGCAGATCAAAGTGATTCCGTTGCAATGCTGAGACTACACATTGTTGAAGTTAGACCAGAGCAGGAGCCACCTTTATTGGATGAAGAGGAAGAAAAACCTGCTGAGAATGAAGGGATCAAGGGAGATGAGACTCATGAGAGTGGATCTCATTCTTCGCTGGGTGAATCTGCCTCTGAAGTTCATGATACTGAGGTTGATAAGATAGGGAAGGAGGCTCCAAAGGAAAAGCCAGGAACCACAGGGGACACTGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCACTTGAGGAAACAGTAACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCATCTAAGTTCCAGGAGGTGGCTGCATTGGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCTGCTAGGAAGCGGATCCCCCTAGATGAGTCAGCTGGGAAGGATGTAGTGGCAGAACAGCTTCAGGTGGCTTATGACTGGGTCAAGGAAAAATATTCTTTGGCAAGAGAGAAGTATGAAGAAGCACTCTTGATCAAACCAGACTTCTATGAGGGACTGTTGGCTCTGGGGCAACAACAATTTGAAATGGCTAAACTTCATTGGTCTTTCGCACTTGCCAAGAAGATAGATCTATCAGGCTGGGATTCAGCAGAGACCCTTCAACTTTTTGACAGTGCCGAAGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAGCTGGAGGAACAGAGAGCAAAGGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAACTATTGAGAAGAAGAAAGAAACAGGGAAGTGCTAATGAAGGTGAGTCCTCCAGTGTTGGTGGTCAGGGTGAGATATCTGCAGAAGAAGCTGCAGAGCAAGCAGCTGTCATGAGATCACAGATTCATCTCTTCTGGGGTAATATGCTTTTCGAAAGATCCCAGGTTGAATGCAAATTAGGAATGAGTGGTTGGAAGAAAAACCTGGATGCTGCAACCGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATTTTGATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAAAGAAGGAGATGATAAAAAGGTCCAGAACCCACAACCCAATGAGACTGGTGAGCATGAGATCAATAAAGCTAATCAAGTATGA 2298 0.453 MGKSGGRRKKGGSVDNSGSAPTANGGVELDSSIFLKKAHELKEEGNKRFQNKDYGGALEQYENALRLIPKTHPDRAVFHSNKAACLMQMKPIDYEAVISECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLGADPNHRDALEIAQRLRTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVPKKGANSAVPNNKLDKSQPVLPTENGPETKSQLPKLVLKPSNGSVKPPNLKNENQKEQSSHSSTIHGHHSEVTIRWRPLKLVYDHDIRLSQMPVNCTFRVLRDIVSKRFPSSSSVLIKYKDCDGDLITITSTNELRLAESTVDSHLLKDPEADQSDSVAMLRLHIVEVRPEQEPPLLDEEEEKPAENEGIKGDETHESGSHSSLGESASEVHDTEVDKIGKEAPKEKPGTTGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSAETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGSANEGESSSVGGQGEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKKNLDAATERFKLAGASEADILMVLKNHCSNGDAKEGDDKKVQNPQPNETGEHEINKANQV. 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00144 765 Gene3D - 278 348 - -
Seca12g00144 765 Gene3D Tetratricopeptide repeat domain 35 166 IPR011990 GO:0005515
Seca12g00144 765 MobiDBLite consensus disorder prediction 369 436 - -
Seca12g00144 765 CDD PB1 279 338 - -
Seca12g00144 765 SUPERFAMILY TPR-like 35 169 IPR011990 GO:0005515
Seca12g00144 765 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g00144 765 ProSiteProfiles PB1 domain profile. 276 368 IPR000270 GO:0005515
Seca12g00144 765 SMART tpr_5 38 71 IPR019734 GO:0005515
Seca12g00144 765 SMART tpr_5 112 145 IPR019734 GO:0005515
Seca12g00144 765 SMART tpr_5 76 111 IPR019734 GO:0005515
Seca12g00144 765 MobiDBLite consensus disorder prediction 245 261 - -
Seca12g00144 765 ProSiteProfiles TPR repeat profile. 38 71 IPR019734 GO:0005515
Seca12g00144 765 MobiDBLite consensus disorder prediction 384 400 - -
Seca12g00144 765 MobiDBLite consensus disorder prediction 192 269 - -
Seca12g00144 765 Coils Coil 605 625 - -
Seca12g00144 765 MobiDBLite consensus disorder prediction 736 751 - -
Seca12g00144 765 SUPERFAMILY CAD & PB1 domains 274 346 - -
Seca12g00144 765 SMART PB1_new 276 368 IPR000270 GO:0005515
Seca12g00144 765 Pfam PB1 domain 276 367 IPR000270 GO:0005515
Seca12g00144 765 MobiDBLite consensus disorder prediction 736 765 - -
Seca12g00144 765 PANTHER PROTEIN CLMP1 1 753 IPR044517 -
Seca12g00144 765 MobiDBLite consensus disorder prediction 408 436 - -
Seca12g00144 765 MobiDBLite consensus disorder prediction 625 651 - -
Seca12g00144 765 MobiDBLite consensus disorder prediction 625 666 - -
Seca12g00144 765 SUPERFAMILY TPR-like 485 581 IPR011990 GO:0005515
Seca12g00144 765 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00144 Seca-Chr12 1343181 1346572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00144 35 159 Calmodulin-binding Proteins AT3G25230 29.412 2.91e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00144 K26538 - gmx:100786963 1270.37